Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,320,144	Δ16,489 bp		[atoS]–[yfaA]	[atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2320144	2336632	16489	35 [0]	[0] 33	[atoS]–[yfaA]	[atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2320143	0 (0.000)	32 (1.190)	28/94	0.0	100%	coding (101/1827 nt)	atoS	sensory histidine kinase AtoS
	?	NC_000913	2336633 =	0 (0.000)					coding (12/1689 nt)	yfaA	DUF2138 domain‑containing protein YfaA

TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2320095‑2320143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC  >  NC_000913/2336633‑2336680                                                                                                   TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT                                                  >  1:1962755/1‑49   ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT                                                >  1:587796/1‑49   ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT                                                  <  1:1966304/47‑1    TGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC                                               <  1:1543257/49‑1     GGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCA                                              >  1:852653/1‑49       CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC                                             >  1:945583/1‑48         ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC                                          >  1:1233163/1‑49            CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA                                       >  1:442265/1‑49               ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG                                    <  1:1384723/49‑1               ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG                                    >  1:1866190/1‑49               ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT                                      <  1:828536/47‑1                TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC                                   <  1:1941366/49‑1                 GGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC                                   >  1:464638/1‑48                  GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCC                                  <  1:955956/48‑1                   TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC                                <  1:722055/49‑1                      TTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT                             >  1:1516513/1‑49                            CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT                       <  1:1924821/49‑1                            CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT                       >  1:667669/1‑49                            CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT                       <  1:1766779/49‑1                                GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA                    >  1:1059969/1‑48                                   TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC                >  1:1865813/1‑49                                     CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCC               <  1:23905/48‑1                                     CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC                >  1:1887750/1‑47                                     CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC                >  1:782398/1‑47                                        TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCC           <  1:1390967/49‑1                                        TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCC           <  1:1233732/49‑1                                        TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC            >  1:476444/1‑48                                        TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC            <  1:1551046/48‑1                                        TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC            <  1:1726898/48‑1                                          GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAT         >  1:691733/1‑49                                            TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT       <  1:1739521/49‑1                                               TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT    <  1:1296314/49‑1                                               TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT     <  1:213274/48‑1                                                ATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA   >  1:1872254/1‑49                                                 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC  >  1:699895/1‑49                                                                                                   TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2320095‑2320143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC  >  NC_000913/2336633‑2336680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.