Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,184,782	Δ6,916 bp		ubiK–yqiI	ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3184782	3191697	6916	36 [0]	[0] 36	ubiK–yqiI	ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3184781	0 (0.000)	35 (1.300)	28/94	0.0	100%	intergenic (‑315/‑59)	ribB/ubiK	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK
	?	NC_000913	3191698 =	0 (0.000)					intergenic (+2/+41)	yqiI/glgS	putative fimbrial protein YqiI/surface composition regulator

ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3184737‑3184781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG  >  NC_000913/3191698‑3191744                                                                                              ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT                                             <  1:1455265/49‑1  TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT                                             >  1:1107642/1‑48    ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAAT                                          <  1:3663/49‑1     TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA                                         <  1:1784341/49‑1      TAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA                                         >  1:1142778/1‑48      TAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA                                         >  1:125194/1‑48        GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA                                       <  1:1902354/48‑1         CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA                                     <  1:1269833/49‑1          GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAAC                                    <  1:1802611/49‑1          GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAAC                                    <  1:486193/49‑1          GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA                                     >  1:551287/1‑48           GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA                                   <  1:854038/49‑1            CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC                                  >  1:1980559/1‑49            CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC                                  >  1:930976/1‑49              GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA                                <  1:155225/49‑1                AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA                              <  1:356582/49‑1                AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA                              <  1:952673/49‑1                    CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGG                          <  1:1967735/49‑1                    CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGG                          >  1:1145395/1‑49                    CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGG                          >  1:301642/1‑49                     ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG                         >  1:604284/1‑49                      TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC                        <  1:1220741/49‑1                      TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC                        >  1:79209/1‑49                       AGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC                        >  1:1269895/1‑48                        GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCC                       <  1:733732/48‑1                           TCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT                     >  1:226418/1‑47                            CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA                   <  1:797194/48‑1                               ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC               <  1:850261/49‑1                                  ATTCTGGCTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT            >  1:1774499/1‑49                                   TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTT           <  1:481676/49‑1                                   TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT            >  1:1524626/1‑48                                   TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT            >  1:1722272/1‑48                                     CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA          >  1:1039740/1‑48                                         TTTATATCTAATACAAACACTAAAACTGGCCATCAGGCCCGTTATAT       >  1:1195540/1‑47                                         TTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT       >  1:1566472/1‑47                                             TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG  <  1:851554/48‑1                                                                                              ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3184737‑3184781 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG  >  NC_000913/3191698‑3191744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.