| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 36 [0] | [0] 36 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 35 (1.300) | 28/94 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACA > NC_000913/3184737‑3184828 | aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct < 1:1455265‑M1/49‑5 (MQ=255) tGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct > 1:1107642‑M1/1‑44 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaat < 1:3663‑M1/49‑8 (MQ=255) ttAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata < 1:1784341‑M1/49‑9 (MQ=255) tAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata > 1:1142778‑M1/1‑40 (MQ=255) tAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata > 1:125194‑M1/1‑40 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaataca < 1:1902354‑M1/48‑11 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa < 1:1269833‑M1/49‑13 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaac < 1:1802611‑M1/49‑14 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaac < 1:486193‑M1/49‑14 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa > 1:551287‑M1/1‑36 (MQ=255) gcagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca < 1:854038‑M1/49‑15 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac > 1:1980559‑M1/1‑34 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac > 1:930976‑M1/1‑34 (MQ=255) gcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacacta < 1:155225‑M1/49‑18 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 1:356582‑M1/49‑20 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 1:952673‑M1/49‑20 (MQ=255) cATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg < 1:1967735‑M1/49‑24 (MQ=255) cATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg > 1:1145395‑M1/1‑26 (MQ=255) cATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg > 1:301642‑M1/1‑26 (MQ=255) aTAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacggg > 1:604284‑M1/1‑25 (MQ=255) tAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggc < 1:1220741‑M1/49‑26 (MQ=255) tAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggc > 1:79209‑M1/1‑24 (MQ=255) aGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggc > 1:1269895‑M1/1‑23 (MQ=255) gCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcc < 1:733732‑M1/48‑27 (MQ=255) tCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat > 1:226418‑M1/1‑19 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatca < 1:797194‑M1/48‑31 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcc < 1:850261‑M1/49‑35 (MQ=255) aTTCTGGCTTATatctaatacaaacactaaaacgggccatcaggcccgt > 1:1774499‑M1/1‑12 (MQ=255) ttCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtt < 1:481676‑M1/49‑39 (MQ=255) ttCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 1:1524626‑M1/1‑11 (MQ=255) ttCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 1:1722272‑M1/1‑11 (MQ=255) cTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta > 1:1039740‑M1/1‑9 (MQ=255) tttATatctaatacaaacactaaaactggccatcaggcccgttatat > 1:1195540‑M1/1‑5 (MQ=255) tttATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:1566472‑M1/1‑5 (MQ=255) tatctaatacaaacactaaaacgggccatcaggcccgttatatcagtg < 1:851554‑M1/48‑48 (MQ=255) | ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACA > NC_000913/3184737‑3184828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |