| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 36 [0] | [0] 35 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 34 (1.240) | 29/96 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > NC_000913/3367643‑3367689 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:1729716/49‑1CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:2116787/48‑1 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:98383/1‑49 AGACACATTACATTCACTGTATTTTTAACAACATCAATGAATACTAAC > 1:83285/1‑48 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:1279040/1‑49 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:1352671/1‑49 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:18623/49‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:176914/1‑49 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:535500/49‑1 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:1599791/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:1780363/1‑48 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 1:310782/48‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:2070135/1‑49 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:1030144/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:74196/48‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:699049/1‑48 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:1400409/48‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:1379234/48‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:100551/48‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:795055/48‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:240750/48‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:1503366/1‑49 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:1132501/49‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:1395704/48‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:1869511/49‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:1414474/49‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:2116175/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:1090846/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG < 1:1950150/49‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:776288/1‑48 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:803034/48‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:1143031/49‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:2069957/48‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:1965393/48‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > NC_000913/3367643‑3367689 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |