| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 36 [0] | [0] 35 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 34 (1.240) | 29/96 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
AAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367596‑3367691 | ctcagacacattacattcactgtatttataacaacatcaatgaatact < 1:2116787‑M2/1‑1 (MQ=255)ctcagacacattacattcactgtatttataacaacatcaatgaatacTa < 1:1729716‑M2/2‑1 (MQ=255) tcagacacattacattcactgtatttataacaacatcaatgaatacTaa > 1:98383‑M2/47‑49 (MQ=255) agacacattacattcactgtatttttaacaacatcaatgaatacTAAc > 1:83285‑M2/45‑48 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACaa > 1:1279040‑M2/44‑49 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAAt > 1:1352671‑M2/43‑49 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAAt < 1:18623‑M2/7‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGc > 1:176914‑M2/41‑49 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGcc < 1:535500‑M2/10‑1 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:1599791‑M2/40‑49 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:1780363‑M2/38‑48 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGAc < 1:310782‑M2/14‑1 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 1:2070135‑M2/31‑49 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg < 1:74196‑M2/19‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAg > 1:699049‑M2/30‑48 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:1030144‑M2/20‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt < 1:1379234‑M2/25‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt < 1:1400409‑M2/25‑1 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg < 1:100551‑M2/28‑1 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg < 1:795055‑M2/28‑1 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg < 1:240750‑M2/29‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCa < 1:1395704‑M2/31‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt > 1:1503366‑M2/18‑49 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt < 1:1132501‑M2/32‑1 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc < 1:1414474‑M2/34‑1 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc < 1:1869511‑M2/34‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:2116175‑M2/10‑49 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:1090846‑M2/10‑49 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:776288‑M2/6‑48 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc < 1:803034‑M2/43‑1 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACg < 1:1950150‑M2/44‑1 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa < 1:1143031‑M2/45‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:2069957‑M2/47‑1 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:1965393‑M2/47‑1 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCgg > 1:210598/1‑49 (MQ=255) | AAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367596‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |