Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,453,928 Δ15,926 bp gspA–[chiA] 16 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3453928 3469853 15926 33 [0] [0] 32 gspA–[chiA] gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 34539270 (0.000)31 (1.210) 23/90 0.0 100% coding (1/420 nt) gspB putative general secretion pathway protein B
?NC_000913 3469854 = 0 (0.000)intergenic (‑1/+291) chiA/tufA endochitinase/translation elongation factor Tu 1

GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453880‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG  >  NC_000913/3469854‑3469900
                                                                                               
GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                 >  1:1655174/1‑48
   ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA                                             <  1:673024/49‑1
    CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA                                            >  1:1015039/1‑49
     CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT                                           <  1:445285/49‑1
        TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC                                        <  1:810620/49‑1
              TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA                                  >  1:2090975/1‑49
              TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG                                     <  1:888001/46‑1
               CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA                                  <  1:407854/48‑1
               CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA                                  <  1:1181671/48‑1
                TGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG                                >  1:1858793/1‑49
                 GCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG                                >  1:459927/1‑48
                     ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA                           <  1:1445025/49‑1
                      CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                          <  1:1186749/49‑1
                           GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                     <  1:1393587/49‑1
                            GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                     >  1:1090209/1‑48
                             CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA                   <  1:768359/49‑1
                             CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA                    >  1:1549159/1‑48
                             CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA                    >  1:473719/1‑48
                                TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                <  1:1904507/49‑1
                                TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                <  1:1288589/49‑1
                                 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                >  1:864064/1‑48
                                  TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA               >  1:1913549/1‑48
                                   AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA               >  1:448003/1‑47
                                   AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA               >  1:546098/1‑47
                                       TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC         >  1:1362704/1‑49
                                        TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC         >  1:984255/1‑48
                                        TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC         >  1:284168/1‑48
                                        TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC         >  1:1907915/1‑48
                                          AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC      <  1:727979/49‑1
                                          AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC      <  1:421292/49‑1
                                          AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC      <  1:1072493/49‑1
                                           AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG     <  1:2009409/49‑1
                                              ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG  <  1:89404/49‑1
                                                                                               
GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453880‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG  >  NC_000913/3469854‑3469900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.