| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 33 [0] | [0] 32 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 31 (1.210) | 23/90 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
CAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > NC_000913/3469809‑3469900 | acctgtttctttctgctcacgcgcggcgatatagaattcaaacattata < 1:673024‑M2/4‑1 (MQ=255) cctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa > 1:1015039‑M2/45‑49 (MQ=255) ctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATAAt < 1:445285‑M2/6‑1 (MQ=255) tttctttctgctcacgcgcggcgatatagaattcaaacatTATAATccc < 1:810620‑M2/9‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtg < 1:888001‑M2/12‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGa > 1:2090975‑M2/35‑49 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGa < 1:1181671‑M2/15‑1 (MQ=255) ctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGa < 1:407854‑M2/15‑1 (MQ=255) tgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg > 1:1858793‑M2/33‑49 (MQ=255) gctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg > 1:459927‑M2/32‑48 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaa < 1:1445025‑M2/22‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaaa < 1:1186749‑M2/23‑1 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGca < 1:1393587‑M2/28‑1 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGca > 1:1090209‑M2/21‑48 (MQ=255) cgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaa < 1:768359‑M2/30‑1 (MQ=255) cgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaa > 1:1549159‑M2/20‑48 (MQ=255) cgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaa > 1:473719‑M2/20‑48 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaaca < 1:1904507‑M2/33‑1 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaaca < 1:1288589‑M2/33‑1 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaaca > 1:864064‑M2/16‑48 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:1913549‑M2/15‑48 (MQ=255) agaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:448003‑M2/14‑47 (MQ=255) agaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:546098‑M2/14‑47 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc > 1:1362704‑M2/10‑49 (MQ=255) tcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc > 1:284168‑M2/9‑48 (MQ=255) tcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc > 1:984255‑M2/9‑48 (MQ=255) tcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc > 1:1907915‑M2/9‑48 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:727979‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:421292‑M2/43‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAc < 1:1072493‑M2/43‑1 (MQ=255) aacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg < 1:2009409‑M2/44‑1 (MQ=255) atTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg < 1:89404‑M2/47‑1 (MQ=255) | CAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > NC_000913/3469809‑3469900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |