| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 30 [0] | [0] 30 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 30 (1.090) | 26/96 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTG > NC_000913/1509515‑1509607 | aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa < 1:627232‑M1/48‑2 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa < 1:793914‑M1/49‑4 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaaca < 1:1686477‑M1/49‑6 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac < 1:1168204‑M1/48‑5 (MQ=255) gTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa < 1:290505‑M1/49‑8 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa > 1:65892‑M1/1‑39 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa > 1:1380338‑M1/1‑39 (MQ=255) ctctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaaca > 1:1591719‑M1/1‑38 (MQ=255) tACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccat > 1:993505‑M1/1‑34 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacca < 1:1823144‑M1/47‑15 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacc < 1:743455‑M1/46‑14 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacc < 1:121583‑M1/46‑14 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattg > 1:25441‑M1/1‑32 (MQ=255) cccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:1478652‑M1/1‑30 (MQ=255) cgcgCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgca < 1:375438‑M1/49‑22 (MQ=255) cgcgCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgca < 1:459154‑M1/49‑22 (MQ=255) gcgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcag < 1:1114597‑M1/49‑23 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcagg > 1:1917545‑M1/1‑25 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatgg < 1:384030‑M1/49‑30 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggt < 1:1879365‑M1/49‑31 (MQ=255) ggCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg < 1:1015050‑M1/49‑32 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt < 1:1882978‑M1/49‑34 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 1:533138‑M1/1‑15 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 1:81736‑M1/1‑15 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt > 1:987791‑M1/1‑14 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 1:1301744‑M1/1‑10 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 1:592661‑M1/1‑9 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:2055470‑M1/1‑5 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:979426‑M1/1‑3 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattga < 1:814140‑M1/48‑47 (MQ=255) | ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTG > NC_000913/1509515‑1509607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |