| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 30 [0] | [0] 30 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 30 (1.090) | 26/96 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGA > NC_000913/1555716‑1555808 | atcccgtcactcttacacccgcgccggaaggcggttatatggtttcta < 1:627232‑M2/1‑1 (MQ=255) tcccgtcactcttacacccgcgccggaaggcggttatatggtttctaaa < 1:793914‑M2/3‑1 (MQ=255) ccgtcactcttacacccgcgccggaaggcggttatatggtttctAAAc < 1:1168204‑M2/4‑1 (MQ=255) ccgtcactcttacacccgcgccggaaggcggttatatggtttctAAACa < 1:1686477‑M2/5‑1 (MQ=255) gtcactcttacacccgcgccggaaggcggttatatggtttctAAACaaa < 1:290505‑M2/7‑1 (MQ=255) actcttacacccgcgccggaaggcggttatatggtttctAAACaaaaa > 1:65892‑M2/40‑48 (MQ=255) actcttacacccgcgccggaaggcggttatatggtttctAAACaaaaa > 1:1380338‑M2/40‑48 (MQ=255) ctcttacacccgcgccggaaggcggttatatggtttctAAACAAAAaca > 1:1591719‑M2/39‑49 (MQ=255) tacacccgcgccggaaggcggttatatggtttctAAACAAAAACACCAt > 1:993505‑M2/35‑49 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACAcc < 1:743455‑M2/13‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACAcc < 1:121583‑M2/13‑1 (MQ=255) acacccgcgccggaaggcggttatatggtttctAAACAAAAACACCa < 1:1823144‑M2/14‑1 (MQ=255) cacccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTg > 1:25441‑M2/33‑49 (MQ=255) cccgcgccggaaggcggttatatggtttctAAACAAAAACACCATTgcg > 1:1478652‑M2/31‑49 (MQ=255) cgcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCa < 1:375438‑M2/21‑1 (MQ=255) cgcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCa < 1:459154‑M2/21‑1 (MQ=255) gcgccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAg < 1:1114597‑M2/22‑1 (MQ=255) gccggaaggcggttatatggtttctAAACAAAAACACCATTGCGCAgg > 1:1917545‑M2/26‑48 (MQ=255) aaggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATgg < 1:384030‑M2/29‑1 (MQ=255) aggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgt < 1:1879365‑M2/30‑1 (MQ=255) ggcggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGgtg < 1:1015050‑M2/31‑1 (MQ=255) cggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGtt < 1:1882978‑M2/33‑1 (MQ=255) ggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGtt > 1:533138‑M2/16‑48 (MQ=255) ggttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGtt > 1:81736‑M2/16‑48 (MQ=255) gttatatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGttt > 1:987791‑M2/15‑48 (MQ=255) tatggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCg > 1:1301744‑M2/11‑49 (MQ=255) atggtttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGt > 1:592661‑M2/10‑49 (MQ=255) tttctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt > 1:2055470‑M2/6‑49 (MQ=255) tctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCAtt > 1:979426‑M2/4‑47 (MQ=255) ctAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGa < 1:814140‑M2/46‑1 (MQ=255) | TCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGA > NC_000913/1555716‑1555808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |