New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2088716	32 (1.170)	9 (0.420) +AGGGGATCTT	7/76	1.1	41.7%	coding (413/825 nt)	yeeZ	putative epimerase YeeZ
	?	NC_000913	= 2859654	0 (0.000)					coding (2562/2562 nt)	mutS	DNA mismatch repair protein MutS

GAAGTACCGGGTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGTTTCTTTCACC  >  NC_000913/2088671‑2088763                                              |                                                gAAGTACCGGGTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTc                                              >  1:438721/1‑49 (MQ=255) gAAGTACCGGGTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTc                                              >  1:756303/1‑49 (MQ=255) gAAGTACCGGGTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTc                                              <  1:1643307/49‑1 (MQ=255) gAAGTACCGGGTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTc                                              >  1:1281295/1‑49 (MQ=255)  aaGTACCGGGTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTCg                                             <  1:1991640/49‑1 (MQ=255)  aaGTACCGGGTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTCg                                             <  1:1878278/49‑1 (MQ=255)    gTACCGGGTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTCGTc                                           >  1:1557787/1‑49 (MQ=255)      aCCGGGTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTCGTCCa                                         >  1:851872/1‑49 (MQ=255)           gTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTCGTCCACTGtt                                    <  1:10485/49‑1 (MQ=255)              aaTTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTCGTCCACTGTTGGt                                 <  1:1875976/49‑1 (MQ=255)              aaTTGTGCAGCCAGTCTTCGAGTTATTCTAATACTCGTCCACTGTTGGt                                 >  1:1104809/1‑49 (MQ=255)                ttGTGCAGCCAGTCTTCGAGTTCTTCTAATACTCGTCCACTGTTGGTTa                               <  1:409668/49‑1 (MQ=255)                ttGTGCAGCCAGTCTTCGAGTTCTTCTAATACTCGTCCACTGTTGGTTa                               <  1:1961447/49‑1 (MQ=255)                      ggCCAGTCTTCGAGTTCTTCTAATACTCGTCCACTGTTGGTTACTGGAt                         >  1:2013558/2‑49 (MQ=255)                      aGCCAGTCTTCGAGTTCTTCTAATACTCGTCCACTGTTGGTTACTGGAt                         >  1:760458/1‑49 (MQ=255)                      aGCCAGTCTTCGAGTTCTTCTAATACTCGTCCACTGTTGGTTACTGGAt                         <  1:568886/49‑1 (MQ=255)                      aGCCAGTCTTCGAGTTCTTCTAATACTCGTCCACTGTTGGTTACTGGAt                         >  1:2013523/1‑49 (MQ=255)                        ccAGTCTTCGAGTTCTTCTAATACTCGTCCACTGTTGGTTACTGGATTa                       <  1:212185/49‑1 (MQ=255)                              ttCGAGTTCTTCTAATACTCGTCCACTGTTGGTTACTGGATTACGCggg                 >  1:823382/1‑49 (MQ=255)                              gacgaGTTCTTCTAATAaggggatcttttacaccaggctcttcaagc                   <  1:32844‑M1/45‑31 (MQ=255)                               acgAGTTCTTCTAATAaggggatcttttacaccaggctcttcaagcga                 >  1:2030464‑M1/2‑16 (MQ=255)                                cGAGTTCTTCTAATAaggggatcttttacaccaggctcttcaagcgata               <  1:1015241‑M1/49‑35 (MQ=255)                                cGAGTTCTTCTAATAaggggatcttttacaccaggctcttcaagcgat                >  1:1407379‑M1/1‑15 (MQ=255)                                 gAGTTCTTCTAATAaggggatcttttacaccaggctcttcaagcgata               >  1:1458444‑M1/1‑14 (MQ=255)                                 gAGTTCTTCTAATACTCGTCCACTGTTGGTTACTGGATTACGCGGggtg              <  1:1171650/49‑1 (MQ=255)                                  aGTTCTTCTAATAaggggatcttttacaccaggctcttcaagcgataaa             <  1:1835939‑M1/49‑37 (MQ=255)                                  aGTTCTTCTAATACTCGTCCACTGTTGGTTACTGGATTACGCGGggtgg             >  1:334729/1‑49 (MQ=255)                                   gTTCTTCTAATAaggggatcttttacaccaggctcttcaagcgataaat            <  1:426271‑M1/49‑38 (MQ=255)                                   gTTCTTCTAATACTCGTCCACTGTTGGTTACTGGATTACGCGGggtggt            >  1:466903/1‑49 (MQ=255)                                    ttcttcTAATACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGtt           <  1:306233/49‑1 (MQ=255)                                     tcttctAATACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGttt          >  1:1044464/1‑49 (MQ=255)                                     tcttctAATACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGttt          >  1:1806368/1‑49 (MQ=255)                                      cttctAATACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGtttc         >  1:207458/1‑49 (MQ=255)                                      cttctAATACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGttt          <  1:997329/48‑1 (MQ=255)                                         ctAATACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGtttcttt      >  1:894895/1‑49 (MQ=255)                                          tAATACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGtttcttt      >  1:1413524/1‑48 (MQ=255)                                          tAATACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGtttcttt      >  1:1268997/1‑48 (MQ=255)                                            ataaggggatcttttacaccaggctcttcaagcgataaatccactccag   >  1:1335055‑M1/1‑3 (MQ=255)                                            aTACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGTTTCTTTCa    <  1:1789829/48‑1 (MQ=255)                                             taaggggatcttttacactaggctcttcaagcgataaatccactccagc  >  1:972201‑M1/1‑2 (MQ=255)                                             tACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGTTTCTTTCAcc  >  1:519631/1‑49 (MQ=255)                                              |                                                GAAGTACCGGGTAAATTGTGCAGCCAGTCTTCGAGTTCTTCTAATACTCGTCCACTGTTGGTTACTGGATTACGCGGGGTGGTTTCTTTCACC  >  NC_000913/2088671‑2088763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.