New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2088716	32 (1.170)	9 (0.420) +AGGGGATCTT	7/76	1.1	41.7%	coding (413/825 nt)	yeeZ	putative epimerase YeeZ
	?	NC_000913	= 2859654	0 (0.000)					coding (2562/2562 nt)	mutS	DNA mismatch repair protein MutS

CCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTAT  >  NC_000913/2859606‑2859681                                                 |                            cccGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGtaa                             <  1:290621/49‑1 (MQ=255)       tCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAAaagatc                       >  1:1012897‑M2/1‑43 (MQ=255)         aGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAAaagatccc                     >  1:308766‑M2/1‑41 (MQ=255)             gcTGGAGTGGATTTATCGCTTGAAGAGCCTAGTGTAAaagatcccctta                 >  1:972201‑M2/1‑37 (MQ=255)              cTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAAaagatccccttat                >  1:1335055‑M2/1‑36 (MQ=255)                       aTTTATCGCTTGAAGAGCCTGGTGTAAaagatccccttattagaagaac       <  1:426271‑M2/49‑23 (MQ=255)                        tttATCGCTTGAAGAGCCTGGTGTAAaagatccccttattagaagaact      <  1:1835939‑M2/49‑24 (MQ=255)                          tATCGCTTGAAGAGCCTGGTGTAAaagatccccttattagaagaactcg    <  1:1015241‑M2/49‑26 (MQ=255)                          tATCGCTTGAAGAGCCTGGTGTAAaagatccccttattagaagaactc     >  1:1458444‑M2/1‑24 (MQ=255)                           aTCGCTTGAAGAGCCTGGTGTAAaagatccccttattagaagaactcg    >  1:1407379‑M2/1‑23 (MQ=255)                            tCGCTTGAAGAGCCTGGTGTAAaagatccccttattagaagaactcgt   >  1:2030464‑M2/1‑22 (MQ=255)                              gCTTGAAGAGCCTGGTGTAAaagatccccttattagaagaactcgtc  <  1:32844‑M2/47‑28 (MQ=255)                                                 |                            CCCGCGTCAGGCGCTGGAGTGGATTTATCGCTTGAAGAGCCTGGTGTAATAACAATTCCCGATAGTCTTTTGCTAT  >  NC_000913/2859606‑2859681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.