| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 21 [0] | [0] 22 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 21 (0.780) | 16/94 | 0.3 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTT > NC_000913/1962518‑1962602 | gACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:1574824‑M1/49‑2 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:1057646‑M1/1‑46 (MQ=255) cATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:1333012‑M1/1‑46 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:1378281‑M1/1‑45 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGTGAGCGCGTcgcta < 1:1607127‑M1/49‑6 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:2059255‑M1/48‑7 (MQ=255) ccTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:712393‑M1/49‑11 (MQ=255) ccTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:1932435‑M1/49‑11 (MQ=255) ccTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:981333‑M1/1‑39 (MQ=255) tttttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctag > 1:1080119‑M1/1‑37 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc < 1:713784‑M1/47‑13 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagc < 1:1035585‑M1/47‑13 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc < 1:129959‑M1/48‑17 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc < 1:1875743‑M1/48‑17 (MQ=255) gAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaa > 1:107603‑M1/1‑28 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:1776521‑M1/1‑27 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaa < 1:1226292‑M1/48‑26 (MQ=255) taAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:437930‑M1/1‑21 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:285376‑M1/1‑17 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:1512822‑M1/1‑17 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc > 1:1153398‑M1/1‑11 (MQ=255) | GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTT > NC_000913/1962518‑1962602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |