| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 21 [0] | [0] 22 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 21 (0.780) | 16/94 | 0.3 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
AAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979282‑1979378 | gacatcgagcctttttcactgagttattaaacatactcgcgagcgcgtc < 1:1574824‑M2/1‑1 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:1057646‑M2/47‑49 (MQ=255) catcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:1333012‑M2/47‑49 (MQ=255) atcgagcctttttcactgagttattaaacatactcgcgagcgcgtcgc > 1:1378281‑M2/46‑48 (MQ=255) tcgagcctttttcactgagttattaaacatactcgtgagcgcgtcgcta < 1:1607127‑M2/5‑1 (MQ=255) gagcctttttcactgagttattaaacatactcgcgagcgcgtcgctac < 1:2059255‑M2/6‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:712393‑M2/10‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtcgctacgcta < 1:1932435‑M2/10‑1 (MQ=255) cctttttcactgagttattaaacatactcgcgagcgcgtcgctacgc > 1:981333‑M2/40‑47 (MQ=255) tttttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTag > 1:1080119‑M2/38‑48 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc < 1:713784‑M2/12‑1 (MQ=255) tttcactgagttattaaacatactcgcgagcgcgtCGCTACGCTagc < 1:1035585‑M2/12‑1 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc < 1:1875743‑M2/16‑1 (MQ=255) cactgagttattaaacatactcgcgagcgcgtCGCTACGCTagcaagc < 1:129959‑M2/16‑1 (MQ=255) gagttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCaaaaa > 1:107603‑M2/29‑49 (MQ=255) agttattaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAAt > 1:1776521‑M2/28‑49 (MQ=255) attaaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaa < 1:1226292‑M2/25‑1 (MQ=255) taaacatactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGaaa > 1:437930‑M2/22‑47 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:285376‑M2/18‑49 (MQ=255) catactcgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGaa > 1:1512822‑M2/18‑49 (MQ=255) cgcgagcgcgtCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc > 1:1153398‑M2/12‑48 (MQ=255) cgctacgctaGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGt > 1:337727/1‑49 (MQ=255) | AAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT > NC_000913/1979282‑1979378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |