| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 45 [0] | [0] 45 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 44 (1.690) | 34/92 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
TGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2994943‑2994991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA > NC_000913/2998869‑2998916 TGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCC > 1:1580170/1‑48 GTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCA > 1:547740/1‑49 TAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCAC > 1:409970/1‑49 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTT < 1:1315381/49‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTT < 1:733080/49‑1 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACT > 1:819572/1‑48 GATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACT < 1:135718/48‑1 TTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTAT < 1:1093771/49‑1 TTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTAT < 1:397514/49‑1 TTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTAT < 1:1225699/49‑1 TTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTAT < 1:1866865/49‑1 TGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATT > 1:501445/1‑48 TGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATT < 1:2048194/48‑1 GTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTT > 1:1595034/1‑48 TTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTA < 1:1333432/48‑1 TTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTA < 1:1471949/48‑1 TACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAA > 1:383588/1‑48 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAA < 1:1497225/49‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAA < 1:1047895/49‑1 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAA > 1:823298/1‑49 CACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACA < 1:1748235/48‑1 CCGCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTT > 1:1411853/1‑48 GCTATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGA > 1:2062225/1‑48 ATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAA > 1:1985038/1‑48 ATAGCTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAA > 1:1105173/1‑48 CTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGG < 1:524316/49‑1 CTTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGG > 1:1556138/1‑49 TTTCTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGT > 1:1123252/1‑49 CTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGT < 1:1391881/48‑1 CTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGT < 1:1319932/48‑1 CTTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGT < 1:1283913/48‑1 TTCAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTT > 1:1627217/1‑49 CAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTA > 1:1395971/1‑49 CAGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTT < 1:1672886/48‑1 AGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTAC < 1:271193/49‑1 AGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTA < 1:1625789/48‑1 AGATCTTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTA < 1:428709/48‑1 TTTATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGG > 1:1035356/1‑49 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTG < 1:1538747/45‑1 TATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTT < 1:1112878/39‑1 ATAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTT < 1:1330944/48‑1 TAGCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGT < 1:1710130/49‑1 GCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTA < 1:868697/49‑1 GCCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTT < 1:1366477/48‑1 CCCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTAC < 1:370653/49‑1 CACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA < 1:781282/49‑1 TGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2994943‑2994991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA > NC_000913/2998869‑2998916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |