| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 45 [0] | [0] 45 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 44 (1.690) | 34/92 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
CCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA > NC_000913/2998821‑2998916 | gtagatttgttacactccgctatagctttcttcagatctttatagccca > 1:547740‑M2/49‑49 (MQ=255) tagatttgttacactccgctatagctttcttcagatctttatagcccAc > 1:409970‑M2/48‑49 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACtt < 1:1315381‑M2/4‑1 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACtt < 1:733080‑M2/4‑1 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACt > 1:819572‑M2/46‑48 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACt < 1:135718‑M2/3‑1 (MQ=255) tttgttacactccgctatagctttcttcagatctttatagcccACTTAt < 1:397514‑M2/6‑1 (MQ=255) tttgttacactccgctatagctttcttcagatctttatagcccACTTAt < 1:1093771‑M2/6‑1 (MQ=255) tttgttacactccgctatagctttcttcagatctttatagcccACTTAt < 1:1866865‑M2/6‑1 (MQ=255) tttgttacactccgctatagctttcttcagatctttatagcccACTTAt < 1:1225699‑M2/6‑1 (MQ=255) tgttacactccgctatagctttcttcagatctttatagcccACTTAtt < 1:2048194‑M2/7‑1 (MQ=255) tgttacactccgctatagctttcttcagatctttatagcccACTTAtt > 1:501445‑M2/42‑48 (MQ=255) gttacactccgctatagctttcttcagatctttatagcccACTTAttt > 1:1595034‑M2/41‑48 (MQ=255) ttacactccgctatagctttcttcagatctttatagcccACTTATTTa < 1:1471949‑M2/9‑1 (MQ=255) ttacactccgctatagctttcttcagatctttatagcccACTTATTTa < 1:1333432‑M2/9‑1 (MQ=255) tacactccgctatagctttcttcagatctttatagcccACTTATTTaa > 1:383588‑M2/39‑48 (MQ=255) cactccgctatagctttcttcagatctttatagcccACTTATTTaacaa < 1:1047895‑M2/13‑1 (MQ=255) cactccgctatagctttcttcagatctttatagcccACTTATTTaacaa < 1:1497225‑M2/13‑1 (MQ=255) cactccgctatagctttcttcagatctttatagcccACTTATTTaacaa > 1:823298‑M2/37‑49 (MQ=255) cactccgctatagctttcttcagatctttatagcccACTTATTTaaca < 1:1748235‑M2/12‑1 (MQ=255) ccgctatagctttcttcagatctttatagcccACTTATTTAACAACtt > 1:1411853‑M2/33‑48 (MQ=255) gctatagctttcttcagatctttatagcccACTTATTTAACAACTTGa > 1:2062225‑M2/31‑48 (MQ=255) atagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:1105173‑M2/28‑48 (MQ=255) atagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:1985038‑M2/28‑48 (MQ=255) ctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAgg < 1:524316‑M2/26‑1 (MQ=255) ctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAgg > 1:1556138‑M2/24‑49 (MQ=255) tttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgt > 1:1123252‑M2/23‑49 (MQ=255) cttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtgt < 1:1391881‑M2/29‑1 (MQ=255) cttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtgt < 1:1283913‑M2/29‑1 (MQ=255) cttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtgt < 1:1319932‑M2/29‑1 (MQ=255) ttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGttt > 1:1627217‑M2/19‑49 (MQ=255) cagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGtttt < 1:1672886‑M2/32‑1 (MQ=255) cagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTa > 1:1395971‑M2/17‑49 (MQ=255) agatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTa < 1:428709‑M2/33‑1 (MQ=255) agatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTa < 1:1625789‑M2/33‑1 (MQ=255) agatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTAc < 1:271193‑M2/34‑1 (MQ=255) tttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTggg > 1:1035356‑M2/11‑49 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGttt < 1:1112878‑M2/31‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTg < 1:1538747‑M2/37‑1 (MQ=255) atagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgtt < 1:1330944‑M2/41‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt < 1:1710130‑M2/43‑1 (MQ=255) gcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgtt < 1:1366477‑M2/44‑1 (MQ=255) gcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTa < 1:868697‑M2/45‑1 (MQ=255) cccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTAc < 1:370653‑M2/46‑1 (MQ=255) cACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaa < 1:781282‑M2/48‑1 (MQ=255) | CCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAA > NC_000913/2998821‑2998916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |