| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 54 [0] | [0] 54 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 53 (2.000) | 40/94 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184734‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > NC_000913/3191698‑3191745 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA < 1:98616/49‑1CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA < 1:1631936/49‑1 TAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT > 1:331170/1‑49 AATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC > 1:1935027/1‑49 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT < 1:635316/49‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCT < 1:1612011/49‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC > 1:1061374/1‑48 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC > 1:264623/1‑48 TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTA < 1:175314/49‑1 GATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:1971717/1‑49 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:1556156/1‑48 TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA > 1:449339/1‑49 TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA > 1:1175468/1‑49 TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA < 1:222366/49‑1 TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA < 1:1985976/49‑1 TAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA > 1:1825080/1‑48 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATAC < 1:817311/48‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAA < 1:254126/49‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:200917/48‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA < 1:618100/48‑1 CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA < 1:1323405/49‑1 CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA > 1:445279/1‑49 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAAC < 1:497992/49‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 1:737454/49‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 1:1095872/49‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:1114422/1‑48 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 1:1838175/49‑1 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 1:984369/49‑1 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:1814552/1‑48 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:1627020/1‑48 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:1506050/1‑48 ACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA < 1:590895/49‑1 CGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 1:1101456/49‑1 GCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG > 1:2058048/1‑49 GCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACG < 1:1573014/49‑1 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG < 1:662601/49‑1 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG > 1:672831/1‑49 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCC < 1:1683619/48‑1 TCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:962046/1‑47 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG > 1:144331/1‑49 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:489346/48‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:1299587/48‑1 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCA < 1:73863/48‑1 ACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGG > 1:61915/1‑49 ACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAG < 1:879996/48‑1 ACATAAGTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGG < 1:1642071/49‑1 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC < 1:892187/49‑1 TTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTT < 1:288755/49‑1 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA > 1:788596/1‑48 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTA < 1:1042831/48‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:1816102/1‑48 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:937841/1‑48 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGT < 1:105469/48‑1 TATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > 1:815594/1‑49 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184734‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > NC_000913/3191698‑3191745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |