| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 54 [0] | [0] 54 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 53 (2.000) | 40/94 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAG > NC_000913/3184734‑3184829 | cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATa < 1:98616‑M1/49‑2 (MQ=255)cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATa < 1:1631936‑M1/49‑2 (MQ=255) tAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATat > 1:331170‑M1/1‑47 (MQ=255) aaTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:1935027‑M1/1‑46 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct < 1:635316‑M1/49‑5 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct < 1:1612011‑M1/49‑5 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:1061374‑M1/1‑45 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:264623‑M1/1‑45 (MQ=255) tGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatcta < 1:175314‑M1/49‑6 (MQ=255) gATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa > 1:1971717‑M1/1‑43 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa > 1:1556156‑M1/1‑42 (MQ=255) ttAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata > 1:449339‑M1/1‑41 (MQ=255) ttAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata > 1:1175468‑M1/1‑41 (MQ=255) ttAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata < 1:222366‑M1/49‑9 (MQ=255) ttAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata < 1:1985976‑M1/49‑9 (MQ=255) tAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata > 1:1825080‑M1/1‑40 (MQ=255) aGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatac < 1:817311‑M1/48‑10 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaa < 1:254126‑M1/49‑12 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaataca < 1:200917‑M1/48‑11 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaataca < 1:618100‑M1/48‑11 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa < 1:1323405‑M1/49‑13 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa > 1:445279‑M1/1‑37 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaac < 1:497992‑M1/49‑14 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac < 1:737454‑M1/49‑16 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac < 1:1095872‑M1/49‑16 (MQ=255) agcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac > 1:1114422‑M1/1‑33 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 1:1838175‑M1/49‑20 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 1:984369‑M1/49‑20 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaa > 1:1814552‑M1/1‑30 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaa > 1:1627020‑M1/1‑30 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaa > 1:1506050‑M1/1‑30 (MQ=255) aCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa < 1:590895‑M1/49‑21 (MQ=255) cGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaac < 1:1101456‑M1/49‑22 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg > 1:2058048‑M1/1‑27 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg < 1:1573014‑M1/49‑23 (MQ=255) aTAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacggg < 1:662601‑M1/49‑25 (MQ=255) aTAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacggg > 1:672831‑M1/1‑25 (MQ=255) gCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcc < 1:1683619‑M1/48‑27 (MQ=255) tCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat > 1:962046‑M1/1‑19 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcag > 1:144331‑M1/1‑18 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatca < 1:489346‑M1/48‑31 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatca < 1:1299587‑M1/48‑31 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatca < 1:73863‑M1/48‑31 (MQ=255) acaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcagg > 1:61915‑M1/1‑17 (MQ=255) acaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcag < 1:879996‑M1/48‑32 (MQ=255) acaTAAGTCTGGTTTATatctaatacaaacactaaaacgggccatcagg < 1:1642071‑M1/49‑33 (MQ=255) tAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc < 1:892187‑M1/49‑36 (MQ=255) ttCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtt < 1:288755‑M1/49‑39 (MQ=255) cTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta > 1:788596‑M1/1‑9 (MQ=255) cTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta < 1:1042831‑M1/48‑40 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:1816102‑M1/1‑6 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:937841‑M1/1‑6 (MQ=255) atatctaatacaaacactaaaacgggccatcaggcccgttatatcagt < 1:105469‑M1/48‑47 (MQ=255) tatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgc > 1:815594‑M1/1‑1 (MQ=255) | CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAG > NC_000913/3184734‑3184829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |