| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 40 [0] | [0] 40 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 40 (1.470) | 34/96 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > NC_000913/3367643‑3367687 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:1506430/49‑1CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:109642/1‑48CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:1603/48‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:727667/49‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:1106343/1‑49 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:1185162/49‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:1869011/49‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:1093386/49‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:1112936/1‑49 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:510645/49‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:792271/49‑1 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:578288/1‑48 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:876585/48‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:850683/48‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:554313/49‑1 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:1563278/1‑49 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:434984/1‑49 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:500103/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:467566/1‑48 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:531882/1‑47 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:376273/1‑49 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:419176/49‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:44243/49‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:1922132/1‑49 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:679768/1‑49 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:1262376/49‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 1:2076963/1‑49 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:1063066/49‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:19672/49‑1 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:1799096/1‑48 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:1927846/49‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:687884/49‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:417326/48‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:210332/48‑1 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:1561877/1‑48 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:1138877/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:51157/48‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:778247/1‑48 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:1372890/1‑49 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:1563680/49‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > NC_000913/3367643‑3367687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |