| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 40 [0] | [0] 40 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 40 (1.470) | 34/96 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
AAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > NC_000913/3367596‑3367687 | ctcagacacattacattcactgtatttataacaacatcaatgaatact > 1:109642‑M2/48‑48 (MQ=255)ctcagacacattacattcactgtatttataacaacatcaatgaatact < 1:1603‑M2/1‑1 (MQ=255)ctcagacacattacattcactgtatttataacaacatcaatgaatacTa < 1:1506430‑M2/2‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACa < 1:727667‑M2/5‑1 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:1106343‑M2/42‑49 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:1185162‑M2/8‑1 (MQ=255) cacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:1869011‑M2/8‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGc < 1:1093386‑M2/9‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGc > 1:1112936‑M2/41‑49 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGcc < 1:510645‑M2/10‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 1:792271‑M2/11‑1 (MQ=255) acattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:578288‑M2/36‑48 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGa < 1:876585‑M2/18‑1 (MQ=255) cactgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGa < 1:850683‑M2/18‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:554313‑M2/20‑1 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:1563278‑M2/28‑49 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTa > 1:434984‑M2/26‑49 (MQ=255) atttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:500103‑M2/25‑49 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:467566‑M2/24‑48 (MQ=255) ttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:531882‑M2/23‑47 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg > 1:376273‑M2/22‑49 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt < 1:419176‑M2/32‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt < 1:44243‑M2/32‑1 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:1922132‑M2/16‑49 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:679768‑M2/16‑49 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCg < 1:1262376‑M2/35‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCg > 1:2076963‑M2/15‑49 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt < 1:1063066‑M2/36‑1 (MQ=255) tcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt < 1:19672‑M2/38‑1 (MQ=255) caatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:1799096‑M2/11‑48 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtttt < 1:417326‑M2/39‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtttt < 1:210332‑M2/39‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta < 1:1927846‑M2/40‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta < 1:687884‑M2/40‑1 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:1561877‑M2/9‑48 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata > 1:1138877‑M2/8‑49 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc < 1:51157‑M2/43‑1 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:778247‑M2/6‑48 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa > 1:1372890‑M2/5‑49 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa < 1:1563680‑M2/45‑1 (MQ=255) | AAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > NC_000913/3367596‑3367687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |