| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 27 [0] | [0] 27 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 25 (0.920) | 21/96 | 0.1 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299582‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > NC_000913/4325166‑4325211 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT > 1:1145440/1‑49GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT > 1:1577995/1‑49GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT > 1:360268/1‑49 GGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:178277/1‑49 TGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC > 1:1059448/1‑49 GCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT > 1:497519/1‑49 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC < 1:175975/47‑1 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:738903/48‑1 TACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAA < 1:476274/49‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA < 1:89955/49‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAA < 1:534708/48‑1 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAA < 1:1210717/49‑1 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC > 1:1946479/1‑49 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT > 1:1005970/1‑49 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:1751686/49‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC > 1:606862/1‑49 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:622174/1‑49 TTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:20266/1‑49 TCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:2057993/1‑48 ACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATT < 1:1378244/49‑1 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTA < 1:1993572/49‑1 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTA < 1:1924298/49‑1 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTA < 1:522984/49‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG > 1:459884/1‑49 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 1:282680/49‑1 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299582‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > NC_000913/4325166‑4325211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |