| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 27 [0] | [0] 27 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 25 (0.920) | 21/96 | 0.1 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
GACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTT > NC_000913/4299579‑4299673 | gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:1593816/1‑49 (MQ=255)gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:209566/1‑49 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat > 1:1145440‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat > 1:1577995‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat > 1:360268‑M1/1‑46 (MQ=255) ggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:178277‑M1/1‑45 (MQ=255) tgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc > 1:1059448‑M1/1‑40 (MQ=255) gcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct > 1:497519‑M1/1‑39 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc < 1:175975‑M1/47‑10 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct < 1:738903‑M1/48‑15 (MQ=255) tACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaa < 1:476274‑M1/49‑17 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa < 1:89955‑M1/49‑19 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaa < 1:534708‑M1/48‑18 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaa < 1:1210717‑M1/49‑21 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggc > 1:1946479‑M1/1‑24 (MQ=255) ccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct > 1:1005970‑M1/1‑23 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccat < 1:1751686‑M1/49‑31 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc > 1:606862‑M1/1‑18 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:622174‑M1/1‑17 (MQ=255) ttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg > 1:20266‑M1/1‑15 (MQ=255) tcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg > 1:2057993‑M1/1‑11 (MQ=255) aCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatt < 1:1378244‑M1/49‑42 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatta < 1:1993572‑M1/49‑43 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatta < 1:1924298‑M1/49‑43 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatta < 1:522984‑M1/49‑43 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg > 1:459884‑M1/1‑4 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt < 1:282680‑M1/49‑47 (MQ=255) | GACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTT > NC_000913/4299579‑4299673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |