| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1482256 = | 0 (0.000) | 3 (0.150) +GTATGGCTGCGAT |
3/70 | 2.1 | 28.3% | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase |
| ? | NC_000913 | = 3693451 | 21 (0.770) | coding (1786/2619 nt) | bcsA | cellulose synthase catalytic subunit | |||||
TGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482208‑1482304 | cctatcggcagaccgacaagataccacgccagcacatcgcagccatact < 1:478480‑M2/1‑1 (MQ=255) atcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:1898400‑M2/46‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:1882518‑M2/43‑46 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa > 1:1371263‑M2/41‑48 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc > 1:1280449‑M2/38‑48 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCt > 1:1152491‑M2/33‑49 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg > 1:192147‑M2/32‑49 (MQ=255) agataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt < 1:1359649‑M2/19‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTc > 1:163659‑M2/29‑48 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:1305018‑M2/21‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:1207274‑M2/21‑1 (MQ=255) accacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt > 1:1192822‑M2/27‑49 (MQ=255) accacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt > 1:424227‑M2/27‑49 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg > 1:1598266‑M2/22‑49 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctg > 1:29936‑M2/22‑49 (MQ=255) gcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCttt > 1:958181‑M1/18‑49 (MQ=255) cacatcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCtttt > 1:2029381‑M1/17‑49 (MQ=255) acatcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTg < 1:1524416‑M1/34‑1 (MQ=255) gcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:1757041‑M2/11‑47 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAg < 1:1173482‑M2/40‑1 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:727759‑M2/9‑49 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa < 1:1074811‑M2/41‑1 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:241531‑M2/8‑49 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:109502‑M2/45‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:126668‑M2/45‑1 (MQ=255) tacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:1961050‑M2/46‑1 (MQ=255) acTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc > 1:994448‑M2/3‑49 (MQ=255) tATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 1:1226965/1‑49 (MQ=255) | TGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482208‑1482304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |