| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1482256 = | 0 (0.000) | 3 (0.150) +GTATGGCTGCGAT |
3/70 | 2.1 | 28.3% | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase |
| ? | NC_000913 | = 3693451 | 21 (0.770) | coding (1786/2619 nt) | bcsA | cellulose synthase catalytic subunit | |||||
GGTTAATCAGCGCCACCAGCGTCGGTGGTGCGATATACCACGCCAGCACCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGA > NC_000913/3693403‑3693498 | ggTTAATCAGCGCCACCAGCGTCGGTGGTGCGATATACCACGCCAGCAc > 1:1781899/1‑49 (MQ=255) gTTAATCAGCGCCACCAGCGTCGGTGGTGCGATATACCACGCCAGCAcc > 1:759334/1‑49 (MQ=255) ttAATCAGCGCCACCAGCGTCGGTGGTGCGATATACCACGCCAGCACCg > 1:822818/1‑49 (MQ=255) aTCAGCGCCACCAGCGTCGGTGGTGCGATATACCACGCCAGCACCGttt < 1:863154/49‑1 (MQ=255) tCAGCGCCACCAGCGTCGGTGGTGCGATATACCACGCCAGCACCGTTTc < 1:214262/49‑1 (MQ=255) cAGCGCCACCAGCGTCGGTGGTGCGATATACCACGCCAGCACCGTTTCg > 1:1095398/1‑49 (MQ=255) aGCGCCACCAGCGTCGGTGGTGCGATATACCACGCCAGCACCGTTTCg > 1:570162/1‑48 (MQ=255) ccaccaGCGTCGGTGGTGCGATATACCACGCCAGCACCGTTTCGTAGAt < 1:441045/49‑1 (MQ=255) ccaccaGCGTCGGTGGTGCGATATACCACGCCAGCACCGTTTCGTAGAt > 1:1531351/1‑49 (MQ=255) caccaGCGTCGGTGGTGCGATATACCACGCCAGCACCGTTTCGTAGAtt < 1:1986068/49‑1 (MQ=255) gCGTCGGTGGTGCGATATACCACGCCAGCACCGTTTCGTAGATTTCACt > 1:1111238/1‑49 (MQ=255) gTCGGTGGTGCGATATACCACGCCAGCACCGTTTCGTAGATTTCACTc > 1:1807051/1‑48 (MQ=255) gTCGGTGGTGCGATATACCACGCCAGCACCGTTTCGTAGATTTCACTc > 1:113894/1‑48 (MQ=255) ggtggtGCGATATACCACGCCAGCACCGTTTCGTAGATTTCACTCCAg < 1:2000299/48‑1 (MQ=255) tggtgCGATATACCACGCCAGCACCGTTTCGTAGATTTCACTCCAGaaa < 1:1541839/49‑1 (MQ=255) gtgCGATATACCACGCCAGCACCGTTTCGTAGATTTCACTCCAGAAaga < 1:254026/49‑1 (MQ=255) gtgCGATATACCACGCCAGCACCGTTTCGTAGATTTCACTCCAGAAag < 1:974698/48‑1 (MQ=255) gCGATATACCACGCCAGCACCGTTTCGTAGATTTCACTCCAGAAAGAGt > 1:1384242/1‑49 (MQ=255) cGATATACCACGCCAGCACCGTTTCGTAGATTTCACTCCAGAAAGAGTg < 1:609381/49‑1 (MQ=255) taCCACGCCAGCACCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGat < 1:1459438/49‑1 (MQ=255) ccACGCCAGCACCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGatat > 1:1823569/1‑49 (MQ=255) gCACatcgcagccatactatgcagaaacaatgctgtcgatggctgcttt > 1:958181‑M2/1‑4 (MQ=255) gCACCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTg < 1:147745/49‑1 (MQ=255) cacatcgcagccatactatgcagaaacaatgctgtcgatggctgctttt > 1:2029381‑M2/1‑3 (MQ=255) acatcgcagccatactatgcagaaacaatgctgtcgatggctgcttttg < 1:1524416‑M2/49‑48 (MQ=255) | GGTTAATCAGCGCCACCAGCGTCGGTGGTGCGATATACCACGCCAGCACCGTTTCGTAGATTTCACTCCAGAAAGAGTGGCGATATTTGCCCTGGA > NC_000913/3693403‑3693498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |