New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2066304	NA (NA)	42 (1.550)	36/96	0.0	100%	noncoding (1050/1195 nt)	IS5	repeat region
	?	NC_000913	2080592 =	0 (0.000)					intergenic (‑1/+197)	yeeA/sbmC	putative transporter YeeA/DNA gyrase inhibitor

CGGTATACCCGGATTTCAAACGGGCTTAATGACTTATCGGCACGCACGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGG  >  NC_000913/2080545‑2080639                                                |                                                gcctatttagaccgtttcttcgccatttaaggcgttatccccagtttg                                                 >  1:1527001‑M2/48‑48 (MQ=255)   ctatttagaccgtttcttcgccatttaaggcgttatccccagtttg                                                 >  1:863550‑M2/46‑46 (MQ=255)   ctatttagaccgtttcttcgccatttaaggcgttatccccagtttg                                                 >  1:1734519‑M2/46‑46 (MQ=255)     atttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGa                                             >  1:545535‑M2/44‑48 (MQ=255)      tttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGaa                                            <  1:855547‑M2/6‑1 (MQ=255)      tttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGaa                                            <  1:1394535‑M2/6‑1 (MQ=255)      tttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGa                                             <  1:958805‑M2/5‑1 (MQ=255)        tagaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAAc                                          <  1:330960‑M2/8‑1 (MQ=255)         agaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACt                                         <  1:948416‑M2/9‑1 (MQ=255)          gaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTcc                                       <  1:1064322‑M2/11‑1 (MQ=255)           accgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCg                                      <  1:1143400‑M2/12‑1 (MQ=255)            ccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGt                                     <  1:1883357‑M2/13‑1 (MQ=255)              gtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTaa                                   >  1:1387154‑M2/35‑49 (MQ=255)               tttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTa                                    <  1:1479282‑M2/14‑1 (MQ=255)                ttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAAt                                  >  1:428160‑M2/33‑48 (MQ=255)                 tcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATg                                 <  1:1391031‑M2/17‑1 (MQ=255)                 tcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATg                                 <  1:122697‑M2/17‑1 (MQ=255)                 tcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATg                                 <  1:647780‑M2/17‑1 (MQ=255)                    tcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGAt                             >  1:2066401‑M2/29‑49 (MQ=255)                      gccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGAtt                            <  1:1262202‑M2/22‑1 (MQ=255)                      gccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTa                           <  1:923565‑M2/23‑1 (MQ=255)                       ccatttaaggcgtcatccccagtttGCAGAAACTCCGTAATGAGATTaa                          <  1:1730773‑M2/24‑1 (MQ=255)                        catttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTaa                          >  1:577485‑M2/25‑48 (MQ=255)                           ttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgc                      >  1:192085‑M2/22‑49 (MQ=255)                            taaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgc                      <  1:1970666‑M2/28‑1 (MQ=255)                            taaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgc                      <  1:555681‑M2/28‑1 (MQ=255)                              aggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCt                   <  1:168830‑M2/31‑1 (MQ=255)                               ggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTc                  <  1:1303678‑M2/32‑1 (MQ=255)                                 cgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt                <  1:635141‑M2/34‑1 (MQ=255)                                   ttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATaa              >  1:147657‑M2/14‑49 (MQ=255)                                    tatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAAc             >  1:1226551‑M2/13‑49 (MQ=255)                                     atccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACt            >  1:778016‑M2/12‑49 (MQ=255)                                     atccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACt            >  1:1208695‑M2/12‑49 (MQ=255)                                      tccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACt            <  1:1659879‑M2/38‑1 (MQ=255)                                      tccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTc           <  1:1177620‑M2/39‑1 (MQ=255)                                        cccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCAt         <  1:1492793‑M2/41‑1 (MQ=255)                                           agtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTg      <  1:1565925‑M2/44‑1 (MQ=255)                                            gtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGt     >  1:1891813‑M2/5‑49 (MQ=255)                                             tttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTc    <  1:676955‑M2/46‑1 (MQ=255)                                              ttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCg   >  1:544765‑M2/3‑49 (MQ=255)                                               tGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCgg  >  1:1349954‑M2/2‑49 (MQ=255)                                               tGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCg   <  1:726472‑M2/47‑1 (MQ=255)                                                |                                                CGGTATACCCGGATTTCAAACGGGCTTAATGACTTATCGGCACGCACGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGG  >  NC_000913/2080545‑2080639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.