| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 97 [0] | [0] 98 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 97 (0.890) | 57/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT > 1:6559397/1‑50CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT < 1:6708690/50‑1CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT > 1:7297926/1‑50CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTT > 1:7370199/1‑50 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT < 1:3862802/50‑1 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT < 1:6681225/50‑1 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT > 1:6949779/1‑50 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT > 1:3026838/1‑50 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 1:7178306/50‑1 GCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGA < 1:732271/50‑1 GCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGA < 1:1874835/50‑1 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA < 1:7938169/50‑1 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 1:5220064/1‑50 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 1:6722458/1‑50 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 1:7248361/1‑50 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 1:1636377/1‑50 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 1:3590921/50‑1 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:2441652/1‑50 CAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:6236922/1‑49 CAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:6158938/1‑49 CAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:6008667/1‑49 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGA < 1:1303953/50‑1 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:1652753/1‑48 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:3034964/1‑48 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:4914460/1‑48 AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG < 1:7308894/50‑1 AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG < 1:622433/50‑1 AACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGC > 1:4377786/1‑50 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC > 1:3421646/1‑50 CGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCG > 1:1792341/1‑50 GCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGC > 1:3539714/1‑50 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT < 1:3903315/50‑1 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:5643906/1‑50 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:5076713/1‑50 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT < 1:1346728/50‑1 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:7638925/1‑50 CTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:2933982/1‑50 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:6557988/1‑49 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:7520258/1‑49 GGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC > 1:6587752/1‑49 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCA < 1:7396156/49‑1 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC < 1:3603032/48‑1 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC < 1:7932946/48‑1 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC < 1:576227/48‑1 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC < 1:170439/48‑1 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAAT < 1:7622059/50‑1 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAAT < 1:2453829/50‑1 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 1:98018/1‑49 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAA > 1:5289658/1‑49 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC < 1:1351492/50‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:3576395/1‑50 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:1201316/1‑49 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:3651878/1‑49 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA < 1:5220257/49‑1 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA < 1:3868035/49‑1 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:853687/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 1:2659732/1‑50 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACA < 1:5450874/49‑1 TGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT > 1:3640228/1‑50 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:4224907/50‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT > 1:4874156/1‑50 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT > 1:1400263/1‑50 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:1873136/50‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:2142058/50‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT > 1:274365/1‑50 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:653172/50‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:5799880/50‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTT < 1:4692005/49‑1 TAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:7061704/1‑50 AGCCGGATAAGGCACCTCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:541886/1‑49 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTA < 1:5346190/50‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTA < 1:3030193/50‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTT < 1:255196/49‑1 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 1:468514/50‑1 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 1:4049829/50‑1 CGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGC < 1:3236154/50‑1 CGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:6396890/1‑49 CGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:7474353/1‑49 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA < 1:371603/50‑1 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:6261298/1‑48 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:6478474/1‑48 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAG < 1:2423952/50‑1 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:7848402/1‑47 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:8154130/1‑47 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:6968524/1‑46 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACGCTTTTTAGCAGAGAT < 1:7579661/50‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT < 1:712866/50‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:1607644/1‑45 GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATC < 1:2620457/50‑1 GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATC < 1:8075111/50‑1 GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTCTTTAGCAGAGATC < 1:1278227/50‑1 CACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAG < 1:3654779/50‑1 CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA < 1:6375557/50‑1 CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA > 1:3564864/1‑50 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC > 1:3797556/1‑50 CTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > 1:7482071/1‑50 TTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > 1:168438/1‑49 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |