| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 97 [0] | [0] 98 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 97 (0.890) | 57/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCA > NC_000913/882704‑882802 | caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt < 1:6708690‑M2/1‑1 (MQ=255)caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt > 1:7297926‑M2/50‑50 (MQ=255)caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt > 1:7370199‑M2/50‑50 (MQ=255)caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt > 1:6559397‑M2/50‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt < 1:6681225‑M2/2‑1 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:6949779‑M2/49‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:3026838‑M2/49‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt < 1:3862802‑M2/2‑1 (MQ=255) ggcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg < 1:7178306‑M2/3‑1 (MQ=255) gcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGa < 1:1874835‑M2/4‑1 (MQ=255) gcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGa < 1:732271‑M2/4‑1 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGaa < 1:7938169‑M2/5‑1 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg > 1:1636377‑M2/45‑50 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg > 1:7248361‑M2/45‑50 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg > 1:5220064‑M2/45‑50 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg > 1:6722458‑M2/45‑50 (MQ=255) gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc < 1:3590921‑M2/7‑1 (MQ=255) gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:2441652‑M2/44‑50 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:6236922‑M2/43‑49 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:6158938‑M2/43‑49 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:6008667‑M2/43‑49 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:3034964‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:4914460‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc > 1:1652753‑M2/42‑48 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGa < 1:1303953‑M2/9‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg < 1:7308894‑M2/10‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg < 1:622433‑M2/10‑1 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc > 1:4377786‑M2/40‑50 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc > 1:3421646‑M2/39‑50 (MQ=255) cgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCg > 1:1792341‑M2/38‑50 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:3539714‑M2/37‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:5076713‑M2/36‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:2933982‑M2/36‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:7638925‑M2/36‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt < 1:3903315‑M2/15‑1 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt < 1:1346728‑M2/15‑1 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:5643906‑M2/36‑50 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:6557988‑M2/35‑49 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:7520258‑M2/35‑49 (MQ=255) ggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc > 1:6587752‑M2/34‑49 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:7932946‑M2/16‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:576227‑M2/16‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:3603032‑M2/16‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:170439‑M2/16‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa < 1:7396156‑M2/17‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:5289658‑M2/32‑49 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCaa > 1:98018‑M2/32‑49 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAt < 1:2453829‑M2/19‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAt < 1:7622059‑M2/19‑1 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:3576395‑M2/30‑50 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac < 1:1351492‑M2/21‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:1201316‑M2/29‑49 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:3651878‑M2/29‑49 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:3868035‑M2/23‑1 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:5220257‑M2/23‑1 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac > 1:2659732‑M2/25‑50 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac > 1:853687‑M2/25‑50 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca < 1:5450874‑M2/25‑1 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt > 1:3640228‑M2/24‑50 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:1873136‑M2/29‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt > 1:274365‑M2/22‑50 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:2142058‑M2/29‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt > 1:1400263‑M2/22‑50 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt > 1:4874156‑M2/22‑50 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:653172‑M2/29‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:4224907‑M2/29‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:5799880‑M2/29‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtt < 1:4692005‑M2/28‑1 (MQ=255) tagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:7061704‑M2/21‑50 (MQ=255) agccggataaggcacctctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:541886‑M2/20‑49 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttttt < 1:255196‑M2/31‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTa < 1:3030193‑M2/32‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTa < 1:5346190‑M2/32‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:468514‑M2/33‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:4049829‑M2/33‑1 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:6396890‑M2/17‑49 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:7474353‑M2/17‑49 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGc < 1:3236154‑M2/34‑1 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:6478474‑M2/16‑48 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:6261298‑M2/16‑48 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa < 1:371603‑M2/35‑1 (MQ=255) gataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:8154130‑M2/15‑47 (MQ=255) gataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:7848402‑M2/15‑47 (MQ=255) gataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCag < 1:2423952‑M2/36‑1 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:6968524‑M2/12‑46 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACGCTTTTTAGCAGAGAt < 1:7579661‑M2/40‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:1607644‑M2/11‑45 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:712866‑M2/40‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:8075111‑M2/41‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:2620457‑M2/41‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTCTTTAGCAGAGATc < 1:1278227‑M2/41‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg < 1:3654779‑M2/43‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa > 1:3564864‑M2/5‑50 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa < 1:6375557‑M2/46‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc > 1:3797556‑M2/4‑50 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:7482071‑M2/3‑50 (MQ=255) tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:168438‑M2/2‑49 (MQ=255) ttGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCa > 1:267995/1‑50 (MQ=255) | GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCA > NC_000913/882704‑882802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |