| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 121 [0] | [0] 124 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 119 (1.090) | 59/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
Only 100 of 119 total aligned reads displayed.
CTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400276‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT < 1:3709834/50‑1CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT < 1:1324244/50‑1CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT < 1:4789005/50‑1CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT > 1:5175063/1‑50CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT > 1:5566535/1‑50 TATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:6031095/1‑50 ATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:8064320/1‑49 ATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:8021541/1‑49 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGC < 1:785246/49‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGC < 1:2453133/49‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGC < 1:5850180/49‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:5091666/1‑48 CGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:870527/1‑47 GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAG < 1:7036255/49‑1 gtAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAA < 1:4704783/48‑1 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:6351913/1‑50 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:6043437/1‑50 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:4327537/1‑50 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC < 1:8055135/50‑1 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:6215561/1‑49 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:7698350/1‑49 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA < 1:6312282/50‑1 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA > 1:1496255/1‑50 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA < 1:5180370/50‑1 CCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT > 1:7305520/1‑50 CGACAAGATACCACGCTAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG > 1:164217/1‑50 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG < 1:8048703/50‑1 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG < 1:4585704/50‑1 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG > 1:4564164/1‑50 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG < 1:1220633/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC > 1:1502052/1‑50 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC > 1:5414121/1‑50 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC > 1:2321585/1‑50 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT > 1:2848074/1‑50 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:857516/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:3822320/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT > 1:6284044/1‑50 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:4150999/50‑1 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG > 1:3160994/1‑50 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG < 1:821470/50‑1 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG > 1:3998875/1‑50 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG < 1:3750177/50‑1 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG > 1:1944792/1‑50 acGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT > 1:2084248/3‑50 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT > 1:5610010/1‑50 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT < 1:7955435/50‑1 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT < 1:4761255/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC < 1:1634288/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC < 1:7430466/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC < 1:7962604/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC < 1:2698528/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 1:8006784/1‑50 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCG < 1:7058702/50‑1 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCG < 1:5172666/50‑1 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCG < 1:5673492/50‑1 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA < 1:4473509/50‑1 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA < 1:2993822/50‑1 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA > 1:543571/1‑50 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT < 1:6922511/50‑1 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT < 1:5443497/50‑1 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT > 1:3889054/1‑50 ACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG > 1:2393087/1‑50 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG < 1:7544437/49‑1 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG < 1:6115358/49‑1 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC < 1:4626900/50‑1 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC < 1:7454851/50‑1 CACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGC > 1:6809326/1‑50 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT > 1:2493263/1‑50 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT > 1:4155115/1‑50 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG > 1:4662907/1‑50 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG < 1:4213423/50‑1 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC > 1:2039655/1‑50 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC > 1:6999691/1‑50 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC > 1:2529406/1‑50 tcGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTC < 1:4022658/48‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCA < 1:7542839/49‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCA < 1:1404483/49‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCA < 1:279573/49‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 1:2309779/1‑47 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA < 1:1062325/50‑1 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 1:967420/1‑50 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 1:1952941/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:3399987/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:135673/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:5237791/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:2403687/1‑50 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT > 1:2794302/1‑50 CCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTG < 1:4149848/50‑1 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT < 1:5789807/50‑1 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT > 1:1268178/1‑50 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 1:4596643/50‑1 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG > 1:5951490/1‑50 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 1:3121519/50‑1 TACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGC > 1:195670/1‑50 ACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT > 1:7357321/1‑50 ACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT > 1:8219214/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > 1:7839620/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > 1:1836058/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > 1:296387/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT < 1:3258888/49‑1 CTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400276‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |