| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 121 [0] | [0] 124 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 119 (1.090) | 59/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
Only 100 of 121 total aligned reads displayed.
GACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCC > NC_000913/1400273‑1400373 | gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac < 1:6259378/50‑1 (MQ=255) aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATact < 1:4922113/50‑2 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 1:3709834‑M1/50‑4 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 1:1324244‑M1/50‑4 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 1:5566535‑M1/1‑47 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 1:5175063‑M1/1‑47 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 1:4789005‑M1/50‑4 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:8064320‑M1/1‑45 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:8021541‑M1/1‑45 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc < 1:5850180‑M1/49‑6 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc < 1:785246‑M1/49‑6 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:5091666‑M1/1‑44 (MQ=255) cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:870527‑M1/1‑43 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag < 1:7036255‑M1/49‑8 (MQ=255) gtagaCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa < 1:4704783‑M1/48‑10 (MQ=255) gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga > 1:7642073‑M1/1‑41 (MQ=255) cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:6351913‑M1/1‑40 (MQ=255) cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:6043437‑M1/1‑40 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac < 1:8055135‑M1/50‑12 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:6215561‑M1/1‑39 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaaa < 1:2904656‑M1/50‑13 (MQ=255) aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa < 1:5180370‑M1/50‑14 (MQ=255) aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa < 1:6312282‑M1/50‑14 (MQ=255) aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa > 1:1496255‑M1/1‑37 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat > 1:7305520‑M1/1‑36 (MQ=255) cGACAAGATACCACGCTAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg > 1:164217‑M1/1‑35 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg > 1:4564164‑M1/1‑35 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg < 1:4585704‑M1/50‑16 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg > 1:460736‑M1/1‑35 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg < 1:1220633‑M1/50‑16 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg < 1:8048703‑M1/50‑16 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc < 1:6108847‑M1/50‑17 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:1502052‑M1/1‑34 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:1867040‑M1/1‑34 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:5414121‑M1/1‑34 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:2321585‑M1/1‑34 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:326459‑M1/1‑34 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct < 1:3822320‑M1/50‑18 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct < 1:4150999‑M1/50‑18 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct > 1:2848074‑M1/1‑33 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct < 1:857516‑M1/50‑18 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg < 1:2226140‑M1/50‑19 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg > 1:3998875‑M1/1‑32 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg > 1:3160994‑M1/1‑32 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg > 1:1944792‑M1/1‑32 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt < 1:4761255‑M1/50‑20 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt < 1:7955435‑M1/50‑20 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 1:1634288‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 1:2698528‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 1:7962604‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 1:6770067‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 1:7430466‑M1/50‑21 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg < 1:5172666‑M1/50‑22 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg < 1:7058702‑M1/50‑22 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg < 1:5673492‑M1/50‑22 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga < 1:4473509‑M1/50‑23 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga < 1:2993822‑M1/50‑23 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga > 1:3925405‑M1/1‑28 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga > 1:543571‑M1/1‑28 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:5443497‑M1/50‑24 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:6922511‑M1/50‑24 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat > 1:3889054‑M1/1‑27 (MQ=255) aCCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg > 1:2393087‑M1/1‑26 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 1:7544437‑M1/49‑25 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 1:6115358‑M1/49‑25 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc > 1:718147‑M1/1‑24 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc < 1:7454851‑M1/50‑27 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc > 1:6809326‑M1/1‑24 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct > 1:2493263‑M1/1‑23 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct > 1:4155115‑M1/1‑23 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct < 1:79663‑M1/50‑28 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg > 1:4662907‑M1/1‑22 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg < 1:2509639‑M1/50‑29 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg < 1:4213423‑M1/50‑29 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc > 1:2529406‑M1/1‑21 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc > 1:2039655‑M1/1‑21 (MQ=255) tcgcagccaTACtatgcagaaacaatgctgtcgatggctgcttttgcgtc < 1:4022658‑M1/48‑39 (MQ=255) tcgcagccaTACtatgcagaaacaatgctgtcgatggctgcttttgcgt > 1:1431648‑M1/3‑12 (MQ=255) gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcag < 1:4238305‑M1/50‑41 (MQ=255) gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtca < 1:279573‑M1/49‑40 (MQ=255) gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtca < 1:7542839‑M1/49‑40 (MQ=255) gcagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgt > 1:2309779‑M1/1‑10 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga > 1:967420‑M1/1‑9 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga > 1:1952941‑M1/1‑9 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga < 1:1062325‑M1/50‑42 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 1:5237791‑M1/1‑8 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 1:3399987‑M1/1‑8 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 1:2403687‑M1/1‑8 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 1:5696636‑M1/1‑8 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 1:135673‑M1/1‑8 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt < 1:5789807‑M1/50‑46 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 1:1268178‑M1/1‑5 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg < 1:4596643‑M1/50‑47 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg > 1:5951490‑M1/1‑4 (MQ=255) tACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgc > 1:195670‑M1/1‑3 (MQ=255) aCtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct > 1:8219214‑M1/1‑2 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgctt > 1:7839620‑M1/1‑1 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgctt < 1:8082887‑M1/50‑50 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgctt > 1:296387‑M1/1‑1 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct < 1:3258888‑M1/49‑49 (MQ=255) | GACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCC > NC_000913/1400273‑1400373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |