Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,453,928 Δ15,926 bp gspA–[chiA] 16 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3453928 3469853 15926 106 [0] [0] 104 gspA–[chiA] gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 34539270 (0.000)95 (0.930) 56/92 0.0 100% coding (1/420 nt) gspB putative general secretion pathway protein B
?NC_000913 3469854 = 0 (0.000)intergenic (‑1/+291) chiA/tufA endochitinase/translation elongation factor Tu 1

Only 100 of 106 total aligned reads displayed.

GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453878‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  >  NC_000913/3469854‑3469902
                                                                                                   
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                   >  1:3535505/1‑50
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                   <  1:2454100/50‑1
 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATT                                                  <  1:8266183/50‑1
 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT                                                   >  1:2117726/1‑49
  GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                 <  1:3448840/50‑1
   TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT                                                <  1:373415/50‑1
   TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT                                                <  1:4347893/50‑1
   TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA                                                 >  1:2454185/1‑49
    GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT                                                >  1:3094641/1‑49
     ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA                                              >  1:6816610/1‑50
     ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA                                              <  1:4353836/50‑1
     ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA                                               <  1:1793855/49‑1
     ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA                                               <  1:4405785/49‑1
      CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT                                             <  1:5908097/50‑1
      CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT                                             >  1:831355/1‑50
         GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC                                          >  1:7326557/1‑50
         GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC                                          >  1:1082010/1‑50
          TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT                                         >  1:7873605/1‑50
          TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT                                         >  1:3416019/1‑50
          TTTCTTTCTGCTCACGCGCGGCGATATAGAACTCAAACATTATAATCCC                                          <  1:7420811/49‑1
            TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT                                        <  1:3593820/49‑1
            TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT                                        <  1:8174207/49‑1
            TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT                                        <  1:2823500/49‑1
             CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                      >  1:2755019/1‑50
             CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                      >  1:2787330/1‑50
             CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG                                       <  1:5563034/49‑1
             CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG                                       <  1:5751416/49‑1
                TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA                                    <  1:4953548/49‑1
                TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                      <  1:8171187/47‑1
                TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                      <  1:5250915/47‑1
                TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                      <  1:5316377/47‑1
                TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT                                      <  1:1007032/47‑1
                 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC                                   <  1:7974614/49‑1
                  TGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG                                  >  1:3794147/1‑49
                   GCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT                                 >  1:6146690/1‑49
                   GCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT                                 >  1:7086434/1‑49
                    CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA                               <  1:6330155/50‑1
                    CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA                               <  1:5530500/50‑1
                    CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA                                <  1:8263817/49‑1
                    CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA                                >  1:2064914/1‑49
                    CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT                                 <  1:7107044/48‑1
                     TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA                               >  1:3579402/1‑49
                     TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA                               >  1:4322276/1‑49
                       ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                            >  1:6365139/1‑50
                       ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                            <  1:2799176/50‑1
                       ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA                            >  1:2299028/1‑50
                       ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA                             <  1:2302861/49‑1
                       ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA                              <  1:6949938/48‑1
                       ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA                              <  1:2910241/48‑1
                       ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA                              <  1:3918509/48‑1
                        CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC                           <  1:2340305/50‑1
                         GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT                          <  1:3427227/50‑1
                         GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT                          <  1:5067279/50‑1
                          CGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG                         >  1:2631844/1‑50
                             GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA                       >  1:5047791/1‑49
                              GCGATATAGAATTCAAACATTATAATCTCTTGTGACGTAAAAACTGCAA                      >  1:2643743/1‑49
                              GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA                     <  1:1149071/50‑1
                              GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA                      >  1:6440649/1‑49
                               CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:2669028/1‑50
                               CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:4864522/1‑50
                               CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA                    >  1:7132886/1‑50
                                 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC                   >  1:766095/1‑49
                                  TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                 <  1:1639205/50‑1
                                  TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA                  >  1:5408653/1‑49
                                   ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA                 >  1:2397579/1‑49
                                    TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA               <  1:3958793/50‑1
                                    TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA               <  1:6269431/50‑1
                                    TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA                <  1:1682051/49‑1
                                    TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA                <  1:1465606/49‑1
                                     AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG              >  1:7995250/1‑50
                                       AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC            >  1:7200195/1‑50
                                       AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC            <  1:6039423/50‑1
                                       AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC            >  1:6144731/1‑50
                                        ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC           >  1:5300717/1‑50
                                         TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC           >  1:7041662/1‑49
                                          TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         >  1:343194/1‑50
                                           CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        >  1:4059034/1‑50
                                           CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        >  1:7255111/1‑50
                                           CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:1800168/49‑1
                                           CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:8326004/49‑1
                                           CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA         <  1:4342300/49‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       <  1:6460691/50‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       <  1:5985418/50‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       <  1:1647557/50‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       >  1:178116/1‑50
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       <  1:3162611/50‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        <  1:1026009/49‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        <  1:5338862/49‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        <  1:4883191/49‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        <  1:4622510/49‑1
                                            AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC        <  1:1841937/49‑1
                                             AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG       >  1:878461/1‑49
                                              ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA     <  1:1846052/50‑1
                                               CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    <  1:4818143/50‑1
                                               CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    <  1:3467156/50‑1
                                               CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    <  1:2587196/50‑1
                                               CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    >  1:2067762/1‑50
                                                ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG   <  1:76020/50‑1
                                                ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG    >  1:4763430/1‑49
                                                 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  <  1:7128097/50‑1
                                                                                                   
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3453878‑3453927
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA  >  NC_000913/3469854‑3469902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.