| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 106 [0] | [0] 104 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 95 (0.930) | 56/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
Only 100 of 106 total aligned reads displayed.
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 | gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:3535505‑M1/1‑50 (MQ=255)gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:2454100‑M1/50‑1 (MQ=255) ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATt < 1:8266183‑M1/50‑2 (MQ=255) ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:2117726‑M1/1‑49 (MQ=255) gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta < 1:3448840‑M1/50‑3 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat < 1:373415‑M1/50‑4 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat < 1:4347893‑M1/50‑4 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:2454185‑M1/1‑47 (MQ=255) gACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat > 1:3094641‑M1/1‑46 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:6816610‑M1/1‑45 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa < 1:4353836‑M1/50‑6 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtata < 1:1793855‑M1/49‑5 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtata < 1:4405785‑M1/49‑5 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataat < 1:5908097‑M1/50‑7 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataat > 1:831355‑M1/1‑44 (MQ=255) gTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccc > 1:7326557‑M1/1‑41 (MQ=255) gTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccc > 1:1082010‑M1/1‑41 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct > 1:7873605‑M1/1‑40 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct > 1:3416019‑M1/1‑40 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAACTCAAACATtataatccc < 1:7420811‑M1/49‑10 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:3593820‑M1/49‑12 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:8174207‑M1/49‑12 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:2823500‑M1/49‑12 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:2755019‑M1/1‑37 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:2787330‑M1/1‑37 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg < 1:5563034‑M1/49‑13 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg < 1:5751416‑M1/49‑13 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga < 1:4953548‑M1/49‑16 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt < 1:8171187‑M1/47‑14 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt < 1:5250915‑M1/47‑14 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt < 1:5316377‑M1/47‑14 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt < 1:1007032‑M1/47‑14 (MQ=255) ctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgac < 1:7974614‑M1/49‑17 (MQ=255) tGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg > 1:3794147‑M1/1‑32 (MQ=255) gCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgt > 1:6146690‑M1/1‑31 (MQ=255) gCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgt > 1:7086434‑M1/1‑31 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa < 1:6330155‑M1/50‑21 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa < 1:5530500‑M1/50‑21 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgta < 1:8263817‑M1/49‑20 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgta > 1:2064914‑M1/1‑30 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgt < 1:7107044‑M1/48‑19 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa > 1:3579402‑M1/1‑29 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa > 1:4322276‑M1/1‑29 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa > 1:6365139‑M1/1‑27 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa < 1:2799176‑M1/50‑24 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa > 1:2299028‑M1/1‑27 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 1:2302861‑M1/49‑23 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaa < 1:6949938‑M1/48‑22 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaa < 1:2910241‑M1/48‑22 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaa < 1:3918509‑M1/48‑22 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac < 1:2340305‑M1/50‑25 (MQ=255) gcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaact < 1:3427227‑M1/50‑26 (MQ=255) gcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaact < 1:5067279‑M1/50‑26 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:2631844‑M1/1‑24 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca > 1:5047791‑M1/1‑21 (MQ=255) gcgATATAGAATTCAAACATtataatctcttgtgacgtaaaaactgcaa > 1:2643743‑M1/1‑20 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaa < 1:1149071‑M1/50‑31 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa > 1:6440649‑M1/1‑20 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:2669028‑M1/1‑19 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:4864522‑M1/1‑19 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:7132886‑M1/1‑19 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:766095‑M1/1‑17 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa < 1:1639205‑M1/50‑35 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca > 1:5408653‑M1/1‑16 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:2397579‑M1/1‑15 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaa < 1:3958793‑M1/50‑37 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaa < 1:6269431‑M1/50‑37 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaa < 1:1682051‑M1/49‑36 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaa < 1:1465606‑M1/49‑36 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:7995250‑M1/1‑13 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc > 1:7200195‑M1/1‑11 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc < 1:6039423‑M1/50‑40 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc > 1:6144731‑M1/1‑11 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:5300717‑M1/1‑10 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:7041662‑M1/1‑9 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:343194‑M1/1‑8 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:4059034‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:7255111‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:1800168‑M1/49‑43 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:8326004‑M1/49‑43 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:4342300‑M1/49‑43 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:6460691‑M1/50‑45 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:5985418‑M1/50‑45 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:1647557‑M1/50‑45 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:178116‑M1/1‑6 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:3162611‑M1/50‑45 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:1026009‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:5338862‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:4883191‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:4622510‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:1841937‑M1/49‑44 (MQ=255) aaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:878461‑M1/1‑5 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgca < 1:1846052‑M1/50‑47 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag < 1:4818143‑M1/50‑48 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag < 1:3467156‑M1/50‑48 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag < 1:2587196‑M1/50‑48 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag > 1:2067762‑M1/1‑3 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg < 1:76020‑M1/50‑49 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag > 1:4763430‑M1/1‑2 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagga < 1:7128097‑M1/50‑50 (MQ=255) | GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |