| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 89 [0] | [0] 89 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 86 (0.810) | 56/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906599‑3906647 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:1597381/1‑50AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC < 1:2450389/50‑1 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:4671740/1‑50 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:7825500/1‑50 AACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGA > 1:5925157/1‑50 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC > 1:2432367/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:469068/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT < 1:3390609/50‑1 TCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:6018018/1‑50 TCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:3938841/1‑50 TGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA > 1:7654206/1‑50 GAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:8157708/1‑50 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACC < 1:41985/50‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACC < 1:3388152/50‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:5018424/1‑49 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA < 1:7403858/48‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCA < 1:4363472/48‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC < 1:633118/47‑1 AGTGGAATAATGTGGCATCGTGTCTTGCGAGGATAAGTGCCGACTTC < 1:4284791/47‑1 GTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:5235799/1‑48 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG < 1:7923891/50‑1 GTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:4586763/1‑49 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA > 1:687621/1‑50 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA > 1:2762927/1‑50 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:4404990/50‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGT < 1:5419134/49‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGT < 1:2006674/49‑1 TAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGACGACTTCACCAGTA > 1:4760421/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:4358912/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 1:7636719/49‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:8091099/1‑50 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC < 1:3083674/50‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC < 1:5544354/50‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:5326192/1‑50 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC < 1:2122943/50‑1 AATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCT > 1:7843892/1‑50 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCAGACTTCACCAGTATTCTC < 1:3027593/50‑1 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT < 1:5550463/50‑1 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT > 1:4918724/1‑50 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT > 1:4203012/1‑50 GTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG > 1:3117173/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG > 1:8160554/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG > 1:831556/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG < 1:1593138/50‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG < 1:5015778/49‑1 AGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT > 1:3308468/1‑50 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTT < 1:6613815/50‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT < 1:7791871/49‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT < 1:7517062/49‑1 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT < 1:4215813/49‑1 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:1000565/50‑1 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:552270/50‑1 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT > 1:5286072/1‑50 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT > 1:2782906/1‑50 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT < 1:3170209/50‑1 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT < 1:6236409/50‑1 TCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG > 1:4193238/1‑50 CGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:1596234/1‑50 CGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:1967505/1‑50 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC < 1:1272589/50‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC < 1:4863089/50‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC < 1:3280538/50‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:8234890/1‑49 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:4217230/1‑49 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:4588842/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:3960679/1‑49 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:5343597/49‑1 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA < 1:2779824/50‑1 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 1:3321924/1‑50 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 1:4540977/1‑50 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 1:5412299/1‑50 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 1:7196089/49‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 1:1406033/49‑1 TGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT > 1:8244919/1‑50 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT < 1:8284287/49‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG > 1:4508466/1‑50 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG < 1:4921252/50‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC < 1:2370378/50‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC < 1:2033157/50‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC > 1:363283/1‑50 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:5490249/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG > 1:3668303/1‑50 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCG < 1:5454780/50‑1 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCG < 1:500818/50‑1 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCG < 1:164615/50‑1 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAA < 1:6564877/50‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT > 1:5175479/1‑50 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG < 1:4080887/50‑1 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA < 1:5133549/50‑1 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906599‑3906647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |