| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 89 [0] | [0] 89 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 86 (0.810) | 56/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906550‑3906648 | aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:4671740‑M2/50‑50 (MQ=255)aaaactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcc > 1:7825500‑M2/50‑50 (MQ=255) aactctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGa > 1:5925157‑M2/48‑50 (MQ=255) actctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGAc > 1:2432367‑M2/47‑50 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt < 1:3390609‑M2/5‑1 (MQ=255) ctctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACt > 1:469068‑M2/46‑50 (MQ=255) tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:6018018‑M2/45‑50 (MQ=255) tctgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:3938841‑M2/45‑50 (MQ=255) tgagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa > 1:7654206‑M2/43‑50 (MQ=255) gagtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:8157708‑M2/42‑50 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTc < 1:633118‑M2/7‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa < 1:7403858‑M2/8‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCa < 1:4363472‑M2/8‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:41985‑M2/10‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:3388152‑M2/10‑1 (MQ=255) agtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:5018424‑M2/41‑49 (MQ=255) agtggaataatgtggcatcgtgtcttgcgaggataagtgcCGACTTc < 1:4284791‑M2/7‑1 (MQ=255) gtgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:5235799‑M2/40‑48 (MQ=255) tgtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg < 1:7923891‑M2/12‑1 (MQ=255) gtaataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAg > 1:4586763‑M2/38‑49 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGt < 1:5419134‑M2/13‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGt < 1:2006674‑M2/13‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa < 1:4404990‑M2/14‑1 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa > 1:2762927‑M2/37‑50 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTa > 1:687621‑M2/37‑50 (MQ=255) taataatgtagcctcgtgtcttgcgaggataagtgaCGACTTCACCAGTa > 1:4760421‑M2/37‑50 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:4358912‑M2/16‑1 (MQ=255) ataatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTAt < 1:7636719‑M2/15‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc < 1:5544354‑M2/17‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc < 1:3083674‑M2/17‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:5326192‑M2/34‑50 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc < 1:2122943‑M2/17‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:8091099‑M2/34‑50 (MQ=255) aatgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATtct > 1:7843892‑M2/33‑50 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcAGACTTCACCAGTATtctc < 1:3027593‑M2/19‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct < 1:5550463‑M2/20‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct > 1:4203012‑M2/31‑50 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTctct > 1:4918724‑M2/31‑50 (MQ=255) gtagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTg > 1:3117173‑M2/30‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg > 1:8160554‑M2/29‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg > 1:831556‑M2/29‑50 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTgg < 1:1593138‑M2/22‑1 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTg < 1:5015778‑M2/21‑1 (MQ=255) agcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt > 1:3308468‑M2/28‑50 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGtt < 1:6613815‑M2/24‑1 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt < 1:4215813‑M2/23‑1 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt < 1:7517062‑M2/23‑1 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGt < 1:7791871‑M2/23‑1 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa < 1:1000565‑M2/25‑1 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTa < 1:552270‑M2/25‑1 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt > 1:5286072‑M2/25‑50 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt < 1:6236409‑M2/26‑1 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt > 1:2782906‑M2/25‑50 (MQ=255) ctcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTAt < 1:3170209‑M2/26‑1 (MQ=255) tcgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATg > 1:4193238‑M2/24‑50 (MQ=255) cgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:1596234‑M2/23‑50 (MQ=255) cgtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:1967505‑M2/23‑50 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:3960679‑M2/22‑49 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:8234890‑M2/22‑49 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:4217230‑M2/22‑49 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:5343597‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:4588842‑M2/28‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTc < 1:1272589‑M2/29‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTc < 1:3280538‑M2/29‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTc < 1:4863089‑M2/29‑1 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 1:2779824‑M2/30‑1 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg > 1:4540977‑M2/20‑50 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg > 1:3321924‑M2/20‑50 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg > 1:5412299‑M2/20‑50 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg < 1:1406033‑M2/31‑1 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAg < 1:7196089‑M2/31‑1 (MQ=255) tgcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGttt > 1:8244919‑M2/16‑50 (MQ=255) gcgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGttt < 1:8284287‑M2/35‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTg > 1:4508466‑M2/14‑50 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTg < 1:4921252‑M2/37‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc < 1:2033157‑M2/38‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc < 1:2370378‑M2/38‑1 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGc > 1:363283‑M2/13‑50 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCt < 1:5490249‑M2/40‑1 (MQ=255) gataagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTg > 1:3668303‑M2/10‑50 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg < 1:164615‑M2/43‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg < 1:500818‑M2/43‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCg < 1:5454780‑M2/43‑1 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGaa < 1:6564877‑M2/45‑1 (MQ=255) gtgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAt > 1:5175479‑M2/5‑50 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATg < 1:4080887‑M2/47‑1 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCa < 1:5133549‑M2/49‑1 (MQ=255) cGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAg > 1:137846/1‑50 (MQ=255) cGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAg > 1:1317239/1‑50 (MQ=255) | GGTGATTTGCATGTTCATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCAG > NC_000913/3906550‑3906648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |