| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 136 [0] | [0] 130 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 127 (1.190) | 63/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 136 total aligned reads displayed.
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA < 1:4207700/50‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA < 1:1879070/50‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:8142066/49‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:8116953/1‑49TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTATTCCTGGTAGT < 1:4698925/49‑1 TTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:7140556/1‑48 TTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:1932887/1‑48 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:949768/1‑50 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:5434849/1‑50 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA < 1:1714340/49‑1 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA < 1:5089829/49‑1 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:5693778/49‑1 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:488409/49‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC < 1:5959767/50‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC < 1:6597352/50‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC < 1:8060484/50‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC < 1:2748832/50‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCG < 1:4661513/50‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:2738855/1‑49 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGc > 1:8076116/1‑49 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:6247163/1‑48 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:2230632/1‑48 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:454398/1‑48 ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:462512/1‑47 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:5511979/1‑46 CTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:1077538/1‑50 CTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:6357392/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:89125/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:1973711/50‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA < 1:3861692/49‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT < 1:1078624/48‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT < 1:6860976/48‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGA < 1:1636857/46‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGA < 1:3238858/46‑1 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:1209884/1‑49 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:1594337/1‑49 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA < 1:2915177/50‑1 AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:2626525/1‑49 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:6394681/50‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:4658717/50‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:7442716/50‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:7785726/50‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:8157970/50‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAA < 1:6471315/49‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAA < 1:1286456/49‑1 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT < 1:6560980/50‑1 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT > 1:2347635/1‑50 TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT > 1:6125612/1‑50 GAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG > 1:3157470/1‑50 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC < 1:7948672/50‑1 AATGTTAGTACTCATTCTTCCCGGTAGTAAGGCGAGATTATTAAAGTT < 1:3195583/48‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:2839123/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:6999334/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT < 1:4297324/49‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT < 1:6998524/49‑1 TAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:8069635/1‑49 TAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:6329232/1‑49 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG > 1:8051873/1‑50 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:7462660/49‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:8289613/49‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:8042618/50‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:1407937/50‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:8255476/50‑1 ACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG > 1:3230228/1‑50 TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC > 1:2375187/1‑50 TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC > 1:6133524/1‑50 TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC > 1:2162747/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG < 1:1154088/50‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG > 1:7781442/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG > 1:4155471/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG < 1:6539968/50‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC < 1:2826452/49‑1 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG < 1:6792611/50‑1 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG > 1:1981545/1‑49 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG > 1:4522402/1‑49 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG > 1:1224510/1‑49 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG > 1:2193444/1‑49 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG > 1:1559133/1‑50 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG > 1:398770/1‑50 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGA < 1:2798933/48‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT > 1:2024101/1‑50 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT > 1:3294677/1‑50 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT > 1:8215403/1‑50 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG < 1:3968439/49‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG < 1:3291936/49‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG < 1:6452776/49‑1 GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT > 1:7251874/1‑50 GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT > 1:5553203/1‑50 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:5597251/49‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTG < 1:3973391/48‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTG < 1:6183018/48‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG < 1:2877825/50‑1 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG > 1:292785/1‑50 GTAAGGCGAGATTATTAAAGTTGCCGTGCAGCGTCCGGGGAAGTGTTGGG > 1:2523350/1‑50 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG < 1:1492167/50‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:6747406/49‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:2741787/49‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:2390659/50‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:3086265/50‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > 1:620541/1‑50 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |