Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,555,491 Δ41,523 bp [yjiC]–lgoD 37 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4555491 4597013 41523 136 [0] [0] 130 [yjiC]–lgoD [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 45554900 (0.000)127 (1.190) 63/96 0.0 100% coding (831/831 nt) yjiC uncharacterized protein YjiC
?NC_000913 4597014 = 0 (0.000)intergenic (+2/+136) lgoD/opgB L‑galactonate oxidoreductase/phosphoglycerol transferase I

Only 100 of 130 total aligned reads displayed.

GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  NC_000913/4596965‑4597062
                                                 |                                                
tttagctatctgtataacctgaatgttagtactcattcttcctggtagta                                                  <  1:4207700‑M2/1‑1 (MQ=255)
tttagctatctgtataacctgaatgttagtactcattcttcctggtagta                                                  <  1:1879070‑M2/1‑1 (MQ=255)
  tagctatctgtataacctgaatgttagtactcattcttcctggtagtaa                                                 <  1:5089829‑M2/2‑1 (MQ=255)
  tagctatctgtataacctgaatgttagtactcattcttcctggtagtaa                                                 <  1:6016885‑M2/2‑1 (MQ=255)
  tagctatctgtataacctgaatgttagtactcattcttcctggtagtaa                                                 <  1:1714340‑M2/2‑1 (MQ=255)
  tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg                                                >  1:949768‑M2/48‑50 (MQ=255)
  tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg                                                >  1:6253214‑M2/48‑50 (MQ=255)
  tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg                                                >  1:5434849‑M2/48‑50 (MQ=255)
   agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg                                                <  1:5693778‑M2/3‑1 (MQ=255)
   agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg                                                <  1:488409‑M2/3‑1 (MQ=255)
    gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc                                              <  1:5959767‑M2/5‑1 (MQ=255)
    gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc                                              <  1:6597352‑M2/5‑1 (MQ=255)
    gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc                                              <  1:8060484‑M2/5‑1 (MQ=255)
    gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc                                              <  1:2748832‑M2/5‑1 (MQ=255)
     ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc                                              >  1:2738855‑M2/45‑49 (MQ=255)
      tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGcgc                                            >  1:8076116‑M2/44‑49 (MQ=255)
      tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc                                              >  1:454398‑M2/44‑48 (MQ=255)
      tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc                                              >  1:6247163‑M2/44‑48 (MQ=255)
      tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc                                              >  1:2230632‑M2/44‑48 (MQ=255)
       atctgtataacctgaatgttagtactcattcttcctggtagtAAGGc                                              >  1:462512‑M2/43‑47 (MQ=255)
        tctgtataacctgaatgttagtactcattcttcctggtagtAAGGc                                              >  1:5511979‑M2/42‑46 (MQ=255)
         ctgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat                                         >  1:1077538‑M2/41‑50 (MQ=255)
            tataacctgaatgttagtactcattcttcctggtagtAAGGCgaga                                          <  1:3238858‑M2/9‑1 (MQ=255)
            tataacctgaatgttagtactcattcttcctggtagtAAGGCgaga                                          <  1:1636857‑M2/9‑1 (MQ=255)
            tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat                                      >  1:89125‑M2/38‑50 (MQ=255)
            tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat                                      >  1:4551148‑M2/38‑50 (MQ=255)
            tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat                                      <  1:1973711‑M2/13‑1 (MQ=255)
            tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta                                       <  1:3861692‑M2/12‑1 (MQ=255)
            tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatt                                        <  1:1078624‑M2/11‑1 (MQ=255)
            tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatt                                        <  1:6860976‑M2/11‑1 (MQ=255)
              taacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta                                    <  1:2915177‑M2/15‑1 (MQ=255)
              taacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta                                    <  1:7228646‑M2/15‑1 (MQ=255)
               aacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta                                    >  1:2626525‑M2/35‑49 (MQ=255)
               aacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta                                    >  1:2522346‑M2/35‑49 (MQ=255)
                acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaaa                                  <  1:6394681‑M2/17‑1 (MQ=255)
                acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaaa                                  <  1:4658717‑M2/17‑1 (MQ=255)
                acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaaa                                  <  1:7785726‑M2/17‑1 (MQ=255)
                acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaa                                   <  1:1286456‑M2/16‑1 (MQ=255)
                acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaa                                   <  1:6471315‑M2/16‑1 (MQ=255)
                  ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt                                <  1:6560980‑M2/19‑1 (MQ=255)
                  ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt                                >  1:2347635‑M2/32‑50 (MQ=255)
                    gaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg                              >  1:3157470‑M2/30‑50 (MQ=255)
                    gaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg                              >  1:4468117‑M2/30‑50 (MQ=255)
                        gttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt                          >  1:6452064‑M2/26‑50 (MQ=255)
                         ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt                          <  1:6998524‑M2/25‑1 (MQ=255)
                         ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt                          <  1:1379387‑M2/25‑1 (MQ=255)
                         ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt                          <  1:4297324‑M2/25‑1 (MQ=255)
                         ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt                          <  1:4023948‑M2/25‑1 (MQ=255)
                         ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg                         >  1:6999334‑M2/25‑50 (MQ=255)
                         ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg                         >  1:2839123‑M2/25‑50 (MQ=255)
                          tagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg                         >  1:8069635‑M2/24‑49 (MQ=255)
                          tagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg                         >  1:6329232‑M2/24‑49 (MQ=255)
                           agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg                         >  1:3203224‑M2/23‑48 (MQ=255)
                            gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa                       <  1:7462660‑M2/28‑1 (MQ=255)
                            gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg                      >  1:8051873‑M2/22‑50 (MQ=255)
                            gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg                      >  1:8036521‑M2/22‑50 (MQ=255)
                             tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc                     <  1:8255476‑M2/30‑1 (MQ=255)
                             tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc                     <  1:8042618‑M2/30‑1 (MQ=255)
                              actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg                    >  1:3230228‑M2/20‑50 (MQ=255)
                               ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt                   <  1:119874‑M2/32‑1 (MQ=255)
                               ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt                   <  1:3908182‑M2/32‑1 (MQ=255)
                                tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc                  >  1:2162747‑M2/18‑50 (MQ=255)
                                tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc                  >  1:2375187‑M2/18‑50 (MQ=255)
                                tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc                  >  1:6133524‑M2/18‑50 (MQ=255)
                                 cattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc                 >  1:4698248‑M2/17‑50 (MQ=255)
                                  attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc                 <  1:2750185‑M2/34‑1 (MQ=255)
                                  attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg                >  1:7781442‑M2/16‑50 (MQ=255)
                                  attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg                >  1:2860922‑M2/16‑50 (MQ=255)
                                  attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg                <  1:1154088‑M2/35‑1 (MQ=255)
                                   ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg               <  1:6792611‑M2/36‑1 (MQ=255)
                                      ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg             >  1:1981545‑M2/12‑49 (MQ=255)
                                      ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg             >  1:2193444‑M2/12‑49 (MQ=255)
                                      ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg             >  1:1224510‑M2/12‑49 (MQ=255)
                                        cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGa            <  1:2798933‑M2/39‑1 (MQ=255)
                                        cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg          >  1:398770‑M2/10‑50 (MQ=255)
                                        cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg          >  1:1559133‑M2/10‑50 (MQ=255)
                                         ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt         >  1:2024101‑M2/9‑50 (MQ=255)
                                         ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt         >  1:8215403‑M2/9‑50 (MQ=255)
                                         ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt         >  1:3294677‑M2/9‑50 (MQ=255)
                                         ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt         >  1:8190416‑M2/9‑50 (MQ=255)
                                         ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg          <  1:3291936‑M2/41‑1 (MQ=255)
                                         ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg          <  1:6452776‑M2/41‑1 (MQ=255)
                                          tggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtg        >  1:1749105‑M2/8‑50 (MQ=255)
                                           ggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt       >  1:7251874‑M2/7‑50 (MQ=255)
                                           ggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt       >  1:5553203‑M2/7‑50 (MQ=255)
                                           ggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt       >  1:811037‑M2/7‑50 (MQ=255)
                                            gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt       <  1:5597251‑M2/44‑1 (MQ=255)
                                            gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtg        <  1:3973391‑M2/43‑1 (MQ=255)
                                            gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtg        <  1:6183018‑M2/43‑1 (MQ=255)
                                            gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt      <  1:617887‑M2/45‑1 (MQ=255)
                                             tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg     <  1:2695410‑M2/46‑1 (MQ=255)
                                             tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg     <  1:2948469‑M2/46‑1 (MQ=255)
                                             tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg     <  1:2877825‑M2/46‑1 (MQ=255)
                                               gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg   >  1:1566887‑M2/3‑50 (MQ=255)
                                               gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg   <  1:1492167‑M2/48‑1 (MQ=255)
                                               gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg   <  1:6559061‑M2/48‑1 (MQ=255)
                                               gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg    <  1:6747406‑M2/47‑1 (MQ=255)
                                               gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg    <  1:875363‑M2/47‑1 (MQ=255)
                                                tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc  <  1:3086265‑M2/49‑1 (MQ=255)
                                                tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc  <  1:2390659‑M2/49‑1 (MQ=255)
                                                 |                                                
GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC  >  NC_000913/4596965‑4597062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.