| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 116 [0] | [0] 119 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 88 (0.970) | 49/82 | 0.0 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
Only 100 of 116 total aligned reads displayed.
CAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCG > NC_000913/257858‑257956 | aGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa < 1:1620853‑M1/50‑2 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:2260300‑M1/50‑4 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:4644232‑M1/50‑4 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:2913630‑M1/50‑4 (MQ=255) aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt > 1:6360244‑M1/1‑47 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg < 1:795149‑M1/50‑5 (MQ=255) ttGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg > 1:6082422‑M1/1‑46 (MQ=255) tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtg > 1:3150832‑M1/1‑45 (MQ=255) gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgc < 1:3509494‑M1/49‑6 (MQ=255) gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgc > 1:6109206‑M1/1‑44 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa < 1:5033280‑M1/50‑8 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa < 1:259844‑M1/50‑8 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca < 1:3429894‑M1/49‑7 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca < 1:6500774‑M1/49‑7 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca < 1:4224693‑M1/49‑7 (MQ=255) aTCAAAAAATTTACCGCACTAGGCCCGTAGATTCGTGAAGGTAagtgca < 1:4302645‑M1/49‑7 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga < 1:4441834‑M1/50‑11 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgca > 1:1675235‑M1/1‑40 (MQ=255) aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga > 1:8283759‑M1/1‑39 (MQ=255) aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa < 1:2552118‑M1/50‑14 (MQ=255) aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa < 1:6787022‑M1/50‑14 (MQ=255) aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa < 1:742871‑M1/50‑14 (MQ=255) aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa < 1:7598798‑M1/50‑14 (MQ=255) aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataa > 1:1341836‑M1/1‑37 (MQ=255) aaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGCAagtgcaaagataa > 1:8128709‑M1/1‑37 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat < 1:2337238‑M1/50‑15 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat < 1:2166428‑M1/50‑15 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat > 1:2720124‑M1/1‑36 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat < 1:613824‑M1/50‑15 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat < 1:4615408‑M1/50‑15 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat < 1:1793674‑M1/50‑15 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat < 1:4111612‑M1/50‑15 (MQ=255) aTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc < 1:1070178‑M1/50‑16 (MQ=255) aTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc > 1:3249264‑M1/1‑35 (MQ=255) tttACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcg < 1:1705224‑M1/50‑17 (MQ=255) tttACCGCAATAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcg < 1:5778999‑M1/50‑17 (MQ=255) tACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat > 1:7831088‑M1/1‑32 (MQ=255) tACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga < 1:4981485‑M1/49‑18 (MQ=255) ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc < 1:3594924‑M1/50‑21 (MQ=255) ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc < 1:6391540‑M1/50‑21 (MQ=255) ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatt < 1:1980585‑M1/49‑20 (MQ=255) gCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctt < 1:8280695‑M1/50‑23 (MQ=255) gCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctt > 1:5102245‑M1/1‑28 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt < 1:4952447‑M1/50‑25 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt < 1:7527257‑M1/50‑26 (MQ=255) cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt > 1:7317931‑M1/1‑25 (MQ=255) aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc > 1:4392723‑M1/1‑23 (MQ=255) aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc > 1:7880456‑M1/1‑23 (MQ=255) aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc > 1:6432906‑M1/1‑23 (MQ=255) aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc > 1:2974180‑M1/1‑23 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga < 1:1383337‑M1/50‑29 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg < 1:2106532‑M1/49‑28 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg < 1:302311‑M1/49‑28 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc < 1:7168948‑M1/48‑27 (MQ=255) ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc < 1:4997323‑M1/48‑27 (MQ=255) gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat > 1:7963874‑M1/1‑21 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt > 1:1444173‑M1/1‑20 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt < 1:835952‑M1/50‑31 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgatt < 1:2956035‑M1/50‑31 (MQ=255) ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattg < 1:742246‑M1/50‑32 (MQ=255) ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattg < 1:1842488‑M1/50‑32 (MQ=255) gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc < 1:5367303‑M1/50‑34 (MQ=255) gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc > 1:42848‑M1/1‑17 (MQ=255) gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc > 1:4005005‑M1/1‑17 (MQ=255) tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct > 1:7010275‑M1/1‑16 (MQ=255) tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:7603947‑M1/50‑37 (MQ=255) tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:1059848‑M1/50‑37 (MQ=255) tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg < 1:4302680‑M1/50‑37 (MQ=255) tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctg < 1:613606‑M1/49‑36 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct > 1:936633‑M1/1‑12 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct < 1:3625161‑M1/50‑39 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct > 1:6657752‑M1/1‑12 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc < 1:3240655‑M1/49‑38 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc < 1:5645029‑M1/49‑38 (MQ=255) cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg < 1:5610308‑M1/49‑40 (MQ=255) gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta > 1:1888769‑M1/1‑9 (MQ=255) gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta < 1:7604972‑M1/50‑42 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat < 1:6178736‑M1/50‑43 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat < 1:4376404‑M1/50‑43 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat > 1:1678612‑M1/1‑8 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat < 1:3404327‑M1/50‑43 (MQ=255) tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggccgtat > 1:7770980‑M1/1‑8 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc > 1:5858361‑M1/1‑6 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc > 1:6145345‑M1/1‑6 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc < 1:6657337‑M1/50‑45 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatg < 1:6004211‑M1/49‑44 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatg < 1:3627177‑M1/49‑44 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatg < 1:4544148‑M1/49‑44 (MQ=255) aGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg < 1:2414773‑M1/50‑46 (MQ=255) ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt < 1:6160157‑M1/50‑47 (MQ=255) ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt > 1:6112588‑M1/1‑4 (MQ=255) gcaagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt > 1:876804‑M1/3‑3 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt > 1:5173884‑M1/1‑3 (MQ=255) tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtca < 1:4408016‑M1/50‑49 (MQ=255) tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtca < 1:2865659‑M1/50‑49 (MQ=255) tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc > 1:1197939‑M1/1‑2 (MQ=255) tAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc > 1:2851692‑M1/1‑2 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa > 1:7902236‑M1/1‑1 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa > 1:1294812‑M1/1‑1 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa > 1:7271100‑M1/1‑1 (MQ=255) | CAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCG > NC_000913/257858‑257956 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |