| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 139 [1] | [0] 142 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 1 (0.010) | 138 (1.300) | 70/96 | 0.0 | 99.7% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
Only 100 of 139 total aligned reads displayed.
ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTA > NC_000913/1627470‑1627565 | aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:6811187‑M1/1‑48 (MQ=255)aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:5860729‑M1/1‑48 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc < 1:3518825‑M1/50‑4 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc > 1:6388842‑M1/1‑47 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc > 1:5213569‑M1/1‑47 (MQ=255) cccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:6482280‑M1/1‑46 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgca < 1:2068591‑M1/50‑7 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgca < 1:4886141‑M1/50‑7 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:4434618‑M1/1‑44 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:1577070‑M1/1‑44 (MQ=255) gTGCTTTGTTATTGACACACAAAAGCGAAGAGGAAGAGAGagaagag > 1:6854225/1‑46 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:2910285‑M1/1‑43 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:4419175‑M1/1‑43 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt < 1:3958823‑M1/50‑9 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt > 1:4544768‑M1/1‑42 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:7614927‑M1/1‑40 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:2310751‑M1/1‑40 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:6317937‑M1/1‑39 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:7172972‑M1/1‑38 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:6978184‑M1/1‑38 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:2429480‑M1/1‑38 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:5527511‑M1/1‑37 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc < 1:1057787‑M1/48‑12 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:8254482‑M1/1‑37 (MQ=255) gTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag > 1:2569311‑M1/1‑36 (MQ=255) gTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag > 1:7975666‑M1/1‑36 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:2567654‑M1/1‑35 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag < 1:6479152‑M1/49‑15 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:4147212‑M1/1‑34 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:1504827‑M1/1‑34 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 1:306388‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcc < 1:6197807‑M1/49‑17 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcc < 1:1525894‑M1/49‑17 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat > 1:1961892‑M1/1‑32 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca < 1:2661281‑M1/49‑18 (MQ=255) tGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc > 1:1303650‑M1/1‑31 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:6568765‑M1/1‑29 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:5280635‑M1/50‑22 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:1378113‑M1/1‑29 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:2763652‑M1/50‑22 (MQ=255) cacacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:1855702‑M1/1‑28 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgat < 1:3509092‑M1/50‑25 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata < 1:3178823‑M1/50‑26 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata < 1:3825931‑M1/50‑26 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata < 1:4624902‑M1/50‑26 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatac > 1:6968415‑M1/1‑24 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatac < 1:560700‑M1/50‑27 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatac < 1:2486572‑M1/50‑27 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatac < 1:683032‑M1/50‑27 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact < 1:2319409‑M1/50‑28 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact > 1:1676622‑M1/1‑23 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact > 1:381652‑M1/1‑23 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg > 1:5720556‑M1/1‑22 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg < 1:2264187‑M1/50‑29 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg < 1:4975814‑M1/50‑29 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:4261100‑M1/50‑31 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct > 1:4080071‑M1/1‑20 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg > 1:4237777‑M1/1‑19 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg > 1:405529‑M1/1‑19 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg > 1:4954025‑M1/1‑19 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 1:1392059‑M1/1‑18 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc < 1:5206635‑M1/50‑33 (MQ=255) ggtgaGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:8319899‑M1/3‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:2045903‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:5608413‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct < 1:333128‑M1/50‑34 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct < 1:598621‑M1/50‑34 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt > 1:1103464‑M1/1‑16 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt > 1:5636660‑M1/1‑16 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:1495463‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:7439610‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt < 1:2851568‑M1/49‑36 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt < 1:288089‑M1/49‑36 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca > 1:3305457‑M1/1‑13 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca < 1:5630327‑M1/50‑38 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttc < 1:812973‑M1/49‑37 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttc < 1:4634262‑M1/49‑37 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 1:5820656‑M1/1‑12 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 1:8090543‑M1/1‑12 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac < 1:1901971‑M1/50‑39 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 1:2211653‑M1/1‑12 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc < 1:3582159‑M1/50‑40 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc < 1:509231‑M1/50‑40 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca > 1:1611305‑M1/1‑9 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca > 1:7765428‑M1/1‑9 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca > 1:6684485‑M1/1‑9 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaa < 1:2936665‑M1/50‑43 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:5001494‑M1/1‑7 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:7364627‑M1/1‑7 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:2352870‑M1/1‑7 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat < 1:400550‑M1/50‑44 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc > 1:4342393‑M1/1‑6 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc < 1:558228‑M1/50‑46 (MQ=255) tagaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:2419323‑M1/2‑4 (MQ=255) gagaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:4930420‑M1/1‑4 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctt < 1:4919241‑M1/50‑48 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctt < 1:3491559‑M1/50‑48 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct < 1:4501814‑M1/49‑47 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct < 1:6230418‑M1/49‑47 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:6655977‑M1/50‑49 (MQ=255) | ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTA > NC_000913/1627470‑1627565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |