| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 139 [1] | [0] 142 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 1 (0.010) | 138 (1.300) | 70/96 | 0.0 | 99.7% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
Only 100 of 142 total aligned reads displayed.
ATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGT > NC_000913/1652715‑1652811 | tcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgc > 1:5213569‑M2/48‑50 (MQ=255)tcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgc < 1:3518825‑M2/3‑1 (MQ=255)tcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgc > 1:3885465‑M2/48‑50 (MQ=255) cccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:7105594‑M2/47‑50 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg < 1:782507‑M2/4‑1 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:4942228‑M2/45‑48 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:4434618‑M2/45‑48 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:1577070‑M2/45‑48 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCa < 1:4886141‑M2/6‑1 (MQ=255) cgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCa < 1:2068591‑M2/6‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg > 1:2910285‑M2/44‑50 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg > 1:662528‑M2/44‑50 (MQ=255) tgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGt < 1:3958823‑M2/8‑1 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGc > 1:2310751‑M2/41‑50 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGc > 1:595309‑M2/41‑50 (MQ=255) tatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:6317937‑M2/40‑50 (MQ=255) tatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:677293‑M2/40‑50 (MQ=255) atgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:6899347‑M2/39‑49 (MQ=255) atgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:2429480‑M2/39‑49 (MQ=255) atgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:7172972‑M2/39‑49 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc < 1:1057787‑M2/11‑1 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:5527511‑M2/38‑48 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCa < 1:4899673‑M2/13‑1 (MQ=255) gttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAg > 1:7975666‑M2/37‑50 (MQ=255) gttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAg > 1:2569311‑M2/37‑50 (MQ=255) ttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAg < 1:6479152‑M2/14‑1 (MQ=255) ttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGc > 1:2567654‑M2/36‑50 (MQ=255) tattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGc > 1:4467913‑M2/35‑49 (MQ=255) tattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGc > 1:1504827‑M2/35‑49 (MQ=255) attgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGcc < 1:6197807‑M2/16‑1 (MQ=255) attgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCa > 1:306388‑M2/34‑50 (MQ=255) ttgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCAt > 1:1961892‑M2/33‑50 (MQ=255) gacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATc < 1:5023559‑M2/19‑1 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:1378113‑M2/30‑50 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:6568765‑M2/30‑50 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc < 1:2763652‑M2/21‑1 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc < 1:2296087‑M2/21‑1 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATcc < 1:5653038‑M2/20‑1 (MQ=255) acacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGa > 1:4311637‑M2/28‑50 (MQ=255) cacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGAt < 1:3509092‑M2/24‑1 (MQ=255) cacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGAt < 1:7596296‑M2/24‑1 (MQ=255) acaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATa < 1:3178823‑M2/25‑1 (MQ=255) acaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATa < 1:6439831‑M2/25‑1 (MQ=255) acaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATa < 1:4624902‑M2/25‑1 (MQ=255) caaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAc < 1:2486572‑M2/26‑1 (MQ=255) caaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAc < 1:560700‑M2/26‑1 (MQ=255) caaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAc > 1:6968415‑M2/25‑50 (MQ=255) caaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAc < 1:683032‑M2/26‑1 (MQ=255) aaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAct > 1:1676622‑M2/24‑50 (MQ=255) aaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAct > 1:381652‑M2/24‑50 (MQ=255) aaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATAct > 1:5622268‑M2/24‑50 (MQ=255) aaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActg < 1:5275199‑M2/28‑1 (MQ=255) aaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActg < 1:2264187‑M2/28‑1 (MQ=255) aagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgc < 1:236419‑M2/29‑1 (MQ=255) aagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgc > 1:1346524‑M2/22‑50 (MQ=255) agcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct > 1:4080071‑M2/21‑50 (MQ=255) agcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct < 1:192967‑M2/30‑1 (MQ=255) gcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgctg > 1:4237777‑M2/20‑50 (MQ=255) gcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgctg > 1:405529‑M2/20‑50 (MQ=255) gcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgctg > 1:4954025‑M2/20‑50 (MQ=255) cgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACtgctgc < 1:5206635‑M2/32‑1 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct < 1:598621‑M2/33‑1 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct < 1:333128‑M2/33‑1 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:2071727‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:2629086‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:5608413‑M2/18‑50 (MQ=255) ggtgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:8319899‑M2/18‑50 (MQ=255) ttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCtt > 1:5636660‑M2/17‑50 (MQ=255) ttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCtt > 1:1103464‑M2/17‑50 (MQ=255) ttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCtt > 1:1495938‑M2/17‑50 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:1495463‑M2/15‑49 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt < 1:2851568‑M2/35‑1 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:4571569‑M2/15‑49 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt < 1:288089‑M2/35‑1 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:7439610‑M2/15‑49 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTc < 1:8141949‑M2/36‑1 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTc < 1:812973‑M2/36‑1 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCa < 1:1696576‑M2/37‑1 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCa > 1:3305457‑M2/14‑50 (MQ=255) ggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAc < 1:1901971‑M2/38‑1 (MQ=255) ggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAc < 1:4041995‑M2/38‑1 (MQ=255) ggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAc > 1:5820656‑M2/13‑50 (MQ=255) gaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAcc < 1:3582159‑M2/39‑1 (MQ=255) acagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCa > 1:6684485‑M2/10‑49 (MQ=255) acagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCa > 1:7765428‑M2/10‑49 (MQ=255) cagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCaaa > 1:4152413‑M2/9‑50 (MQ=255) cagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCaaa > 1:1530134‑M2/9‑50 (MQ=255) cagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCaaa < 1:2936665‑M2/42‑1 (MQ=255) agtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt > 1:5001494‑M2/8‑50 (MQ=255) agtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt > 1:2352870‑M2/8‑50 (MQ=255) gtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATc > 1:4342393‑M2/7‑50 (MQ=255) gagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCt > 1:5535116‑M2/5‑50 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCtt < 1:3491559‑M2/47‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCtt < 1:4919241‑M2/47‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCt < 1:6230418‑M2/46‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCt < 1:4501814‑M2/46‑1 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt < 1:6631923/50‑1 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt > 1:5780629/1‑50 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt < 1:1252637/50‑1 (MQ=255) aGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGt < 1:904995/50‑1 (MQ=255) | ATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAGT > NC_000913/1652715‑1652811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |