| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 141 [0] | [0] 138 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 137 (1.260) | 73/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 141 total aligned reads displayed.
ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGA > NC_000913/3362112‑3362209 | aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:5978677/1‑50 (MQ=255)aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:2344978/1‑50 (MQ=255) tGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:3418265/1‑49 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:4052301‑M1/1‑48 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:7264686‑M1/1‑48 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:2026674‑M1/1‑48 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 1:7996516‑M1/1‑47 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 1:7275581‑M1/1‑47 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 1:6694950‑M1/1‑47 (MQ=255) tCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 1:4383231‑M1/1‑46 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:7773690‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:6640701‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaaca < 1:3068985‑M1/49‑6 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaaca < 1:1455604‑M1/49‑6 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaaca < 1:8102813‑M1/49‑6 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaac < 1:4175623‑M1/48‑5 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaac < 1:3822928‑M1/48‑5 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:6277361‑M1/50‑8 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:1150978‑M1/50‑8 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg > 1:6086940‑M1/1‑42 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg > 1:5884418‑M1/1‑42 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:1149975‑M1/50‑9 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:6997314‑M1/1‑40 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg < 1:917882‑M1/50‑12 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:2176263‑M1/1‑39 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg < 1:1681792‑M1/50‑12 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgg < 1:6664985‑M1/50‑13 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtagcaatgccgga > 1:7192452‑M1/1‑37 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga < 1:239610‑M1/50‑14 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:1164230‑M1/1‑37 (MQ=255) tacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:556112‑M1/1‑36 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggac < 1:2103306‑M1/49‑15 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:4902733‑M1/1‑34 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:1042592‑M1/1‑34 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggaca < 1:5838745‑M1/49‑16 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagg < 1:454671‑M1/50‑18 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:7375615‑M1/1‑33 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:7920499‑M1/1‑33 (MQ=255) cACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:4696646‑M1/1‑30 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta < 1:5226097‑M1/50‑22 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:4148884‑M1/49‑21 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:5907725‑M1/49‑21 (MQ=255) tGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:3420950‑M1/1‑27 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtact < 1:3659725‑M1/48‑24 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatca < 1:3962513‑M1/50‑28 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatca < 1:4480361‑M1/50‑28 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatca < 1:2838587‑M1/50‑28 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:5533763‑M1/49‑27 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:282487‑M1/49‑27 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:7600214‑M1/49‑27 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcag < 1:2484239‑M1/49‑29 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg < 1:1328404‑M1/49‑30 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca < 1:4891083‑M1/50‑32 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca > 1:6889937‑M1/1‑19 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggc < 1:3222565‑M1/49‑31 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggc < 1:6757201‑M1/49‑31 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:5228754‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt < 1:5361338‑M1/50‑34 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:3193850‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt > 1:2524127‑M1/1‑17 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt < 1:2489890‑M1/50‑34 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc < 1:1167125‑M1/50‑35 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc > 1:6895882‑M1/1‑16 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg > 1:7814018‑M1/1‑15 (MQ=255) acaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgt < 1:7450003‑M1/50‑37 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt > 1:1459397‑M1/1‑13 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt > 1:179364‑M1/1‑13 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:4269430‑M1/1‑12 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt < 1:5994842‑M1/50‑39 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:2437354‑M1/1‑12 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttt < 1:2695474‑M1/50‑40 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttt < 1:6691379‑M1/50‑40 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:6587888‑M1/1‑10 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:673511‑M1/1‑10 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgttttat < 1:4448143‑M1/50‑42 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgttttat < 1:6427538‑M1/50‑42 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgttttat < 1:7462520‑M1/50‑42 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgttttat < 1:5761129‑M1/50‑42 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:2414652‑M1/1‑9 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta < 1:3685700‑M1/49‑41 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:5234126‑M1/1‑9 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata > 1:5422211‑M1/1‑8 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 1:1963929‑M1/50‑43 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata > 1:5063038‑M1/1‑8 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 1:7800465‑M1/50‑43 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 1:169349‑M1/50‑44 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:4999387‑M1/1‑7 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:3290259‑M1/1‑7 (MQ=255) gAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:3579680‑M1/1‑6 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga < 1:8270867‑M1/50‑46 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga < 1:8224970‑M1/50‑46 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacg < 1:4784941‑M1/49‑45 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacg < 1:8010543‑M1/49‑45 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacg < 1:8226406‑M1/49‑45 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat < 1:3767430‑M1/50‑47 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat > 1:4646638‑M1/1‑4 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:3991327‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc > 1:575812‑M1/1‑3 (MQ=255) aCtaacaatgccggacaggagtactatcaggcattcgttttatacgatcg > 1:3153820‑M1/1‑2 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcg < 1:683603‑M1/49‑49 (MQ=255) | ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGA > NC_000913/3362112‑3362209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |