| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 141 [0] | [0] 138 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 137 (1.260) | 73/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 138 total aligned reads displayed.
AAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367595‑3367692 | gctcagacacattacattcactgtatttataacaacatcaatgaatact > 1:4052301‑M2/49‑49 (MQ=255)gctcagacacattacattcactgtatttataacaacatcaatgaatact > 1:7264686‑M2/49‑49 (MQ=255)gctcagacacattacattcactgtatttataacaacatcaatgaatact > 1:2026674‑M2/49‑49 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa > 1:7996516‑M2/48‑50 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa > 1:6694950‑M2/48‑50 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTaa > 1:7275581‑M2/48‑50 (MQ=255) ctcagacacattacattcactgtatttataacaacatcaatgaatacTa < 1:6698188‑M2/2‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAAc < 1:3822928‑M2/4‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAAc < 1:4175623‑M2/4‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACaa > 1:7773690‑M2/45‑50 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACa < 1:3068985‑M2/5‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACa < 1:4392704‑M2/5‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACa < 1:743048‑M2/5‑1 (MQ=255) agacacattacattcactgtatttataacaacatcaatgaatacTAACa < 1:1455604‑M2/5‑1 (MQ=255) gacacattacattcactgtatttataacaacatcaatgaatacTAACAAt < 1:1150978‑M2/7‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:6086940‑M2/43‑50 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg > 1:5884418‑M2/43‑50 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:5291632‑M2/8‑1 (MQ=255) acacattacattcactgtatttataacaacatcaatgaatacTAACAATg < 1:1149975‑M2/8‑1 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc > 1:6997314‑M2/41‑50 (MQ=255) acattacattcactgtatttataacaacatcaatgaatacTAACAATGcc < 1:6683831‑M2/10‑1 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 1:7807373‑M2/11‑1 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 1:917882‑M2/11‑1 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 1:1681792‑M2/11‑1 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg > 1:2176263‑M2/40‑50 (MQ=255) cattacattcactgtatttataacaacatcaatgaatacTAACAATGCCg < 1:2568521‑M2/11‑1 (MQ=255) attacattcactgtatttataacaacatcaatgaatacTAACAATGCCgg < 1:6664985‑M2/12‑1 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:1164230‑M2/38‑50 (MQ=255) ttacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa < 1:3754948‑M2/13‑1 (MQ=255) tacattcactgtatttataacaacatcaatgaatacTAACAATGCCGGa > 1:556112‑M2/37‑49 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACa < 1:5838745‑M2/15‑1 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:1042592‑M2/35‑50 (MQ=255) cattcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:4902733‑M2/35‑50 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAgg < 1:454671‑M2/17‑1 (MQ=255) attcactgtatttataacaacatcaatgaatacTAACAATGCCGGACAg > 1:7920499‑M2/34‑49 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:3292605‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGt < 1:5907725‑M2/20‑1 (MQ=255) actgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTa < 1:5226097‑M2/21‑1 (MQ=255) ctgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:4220355‑M2/29‑50 (MQ=255) tgtatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTAc > 1:3420950‑M2/28‑49 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACt < 1:3659725‑M2/23‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTa < 1:721711‑M2/24‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:3438242‑M2/26‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt < 1:2102972‑M2/25‑1 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt > 1:497875‑M2/26‑50 (MQ=255) tatttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTAt < 1:4765951‑M2/25‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATc < 1:7600214‑M2/26‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATc < 1:5533763‑M2/26‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATc < 1:282487‑M2/26‑1 (MQ=255) tttataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCa < 1:2838587‑M2/27‑1 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg < 1:1309243‑M2/28‑1 (MQ=255) tataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAg < 1:2484239‑M2/28‑1 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 1:8146343‑M2/21‑49 (MQ=255) ataacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAgg > 1:3843861‑M2/21‑49 (MQ=255) taacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGc < 1:3222565‑M2/30‑1 (MQ=255) aacaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAt > 1:6886542‑M2/19‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 1:2524127‑M2/18‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 1:3193850‑M2/18‑50 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:2489890‑M2/33‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt < 1:5361338‑M2/33‑1 (MQ=255) acaacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCAtt > 1:5228754‑M2/18‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc < 1:5494781‑M2/34‑1 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc < 1:1167125‑M2/34‑1 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc > 1:6895882‑M2/17‑50 (MQ=255) caacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTc < 1:4582983‑M2/34‑1 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCg > 1:7814018‑M2/16‑50 (MQ=255) aacatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCg < 1:6574170‑M2/35‑1 (MQ=255) acatcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGt < 1:7450003‑M2/36‑1 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt > 1:1459397‑M2/14‑50 (MQ=255) catcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGtt < 1:2213165‑M2/37‑1 (MQ=255) atcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:4269430‑M2/13‑50 (MQ=255) atcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:690402‑M2/13‑50 (MQ=255) atcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt > 1:2437354‑M2/13‑50 (MQ=255) atcaatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGttt < 1:5994842‑M2/38‑1 (MQ=255) caatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:6587888‑M2/11‑50 (MQ=255) caatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:673511‑M2/11‑50 (MQ=255) caatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:6162099‑M2/11‑50 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 1:6427538‑M2/41‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 1:1694491‑M2/41‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 1:5761129‑M2/41‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtat < 1:4448143‑M2/41‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta < 1:3685700‑M2/40‑1 (MQ=255) aatgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTta > 1:2414652‑M2/10‑49 (MQ=255) atgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTtata < 1:1963929‑M2/42‑1 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:4104668‑M2/8‑50 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc < 1:169349‑M2/43‑1 (MQ=255) tgaatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAc > 1:4999387‑M2/8‑50 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACg < 1:8010543‑M2/44‑1 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACg < 1:4784941‑M2/44‑1 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACg < 1:8226406‑M2/44‑1 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa < 1:8224970‑M2/45‑1 (MQ=255) aatacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGa < 1:8270867‑M2/45‑1 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt < 1:7544819‑M2/46‑1 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt < 1:5097164‑M2/46‑1 (MQ=255) atacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAt > 1:4646638‑M2/5‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc > 1:575812‑M2/4‑50 (MQ=255) tacTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATc < 1:3991327‑M2/47‑1 (MQ=255) acTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg > 1:3153820‑M2/3‑50 (MQ=255) cTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCg < 1:683603‑M2/48‑1 (MQ=255) tAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGt > 1:293916/1‑50 (MQ=255) | AAAATCGAACTTGATGGGAAAGCTGTGATAAGCGTAGTCTACTTGTGATAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGGT > NC_000913/3367595‑3367692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |