| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 97 [0] | [0] 94 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 94 (0.880) | 51/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACA > NC_000913/3618943‑3619039 | gcggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTt < 1:862322‑M1/50‑2 (MQ=255)gcggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTt < 1:2785188‑M1/50‑2 (MQ=255)gcggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTt < 1:6215017‑M1/50‑2 (MQ=255)gcggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 1:3377154‑M1/1‑49 (MQ=255)gcggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 1:4891651‑M1/1‑49 (MQ=255)gcggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 1:5573923‑M1/1‑49 (MQ=255) ggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtac > 1:3285049‑M1/1‑47 (MQ=255) ggcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtac < 1:1862947‑M1/50‑4 (MQ=255) gcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacg < 1:3101497‑M1/50‑5 (MQ=255) gcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacg < 1:1455215‑M1/50‑5 (MQ=255) gcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacg > 1:8176085‑M1/1‑46 (MQ=255) gcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacg < 1:225056‑M1/50‑5 (MQ=255) gcgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacg < 1:547582‑M1/50‑5 (MQ=255) cgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgc > 1:1954292‑M1/1‑45 (MQ=255) cgTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgc > 1:5291095‑M1/1‑45 (MQ=255) gTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgcc < 1:5656333‑M1/50‑7 (MQ=255) gTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgcc < 1:373748‑M1/50‑7 (MQ=255) gTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgc > 1:305239‑M1/1‑44 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccgtt < 1:4818003‑M1/50‑10 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccatt > 1:6668354‑M1/1‑41 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccatt < 1:7544730‑M1/50‑10 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccatt < 1:1031874‑M1/50‑10 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccatt > 1:97221‑M1/1‑41 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccatt > 1:2917226‑M1/1‑41 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccatt > 1:2799328‑M1/1‑41 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccat < 1:1082347‑M1/49‑9 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccat < 1:6559687‑M1/49‑9 (MQ=255) cGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccat < 1:2801726‑M1/49‑9 (MQ=255) ggCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattg < 1:2733202‑M1/50‑11 (MQ=255) ggCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattg < 1:2495709‑M1/50‑11 (MQ=255) gCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgt < 1:8052420‑M1/50‑12 (MQ=255) gCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgt < 1:3528066‑M1/50‑12 (MQ=255) cACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtc < 1:378941‑M1/50‑13 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc > 1:5125179‑M1/1‑37 (MQ=255) aCGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcc < 1:922701‑M1/50‑14 (MQ=255) ggCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaa < 1:8158775‑M1/50‑17 (MQ=255) gCATTTGCAGTGCTTGCCGAAGGCAGATTGAGTtacgccattgtcccaat > 1:7761825‑M1/1‑33 (MQ=255) gCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaat < 1:2584137‑M1/50‑18 (MQ=255) gCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaat > 1:6387542‑M1/1‑33 (MQ=255) gCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaat < 1:824655‑M1/50‑18 (MQ=255) cATTTGCAGTGCTTGCCGTAGGAAGATTGAGTtacgccattgtcccaatc > 1:6373192‑M1/1‑32 (MQ=255) cATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatc > 1:6206773‑M1/1‑32 (MQ=255) cATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatc > 1:5404747‑M1/1‑32 (MQ=255) cATTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatc > 1:6860662‑M1/1‑32 (MQ=255) aTTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcg > 1:7558911‑M1/1‑31 (MQ=255) aTTTGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcg > 1:6168042‑M1/1‑31 (MQ=255) tttGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgt < 1:4285336‑M1/50‑21 (MQ=255) tttGCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgt > 1:1919302‑M1/1‑30 (MQ=255) gCAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtct < 1:6583150‑M1/49‑23 (MQ=255) cAGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtctt < 1:5911151‑M1/49‑24 (MQ=255) aGTGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcc > 1:3840146‑M1/1‑25 (MQ=255) tGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcct > 1:1704871‑M1/1‑23 (MQ=255) tGCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttccc > 1:4342120‑M1/1‑23 (MQ=255) gCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctg > 1:2637516‑M1/1‑22 (MQ=255) gCTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctg > 1:3060379‑M1/1‑22 (MQ=255) cTTGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctga < 1:7943805‑M1/49‑29 (MQ=255) ttGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaat > 1:3904957‑M1/1‑20 (MQ=255) tGCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatc > 1:636345‑M1/1‑19 (MQ=255) tGCCGAAGGAAGATTGAGTtacgccattgtccaaatcgtcttcctgaatc > 1:1898264‑M1/1‑19 (MQ=255) gCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatc < 1:66013‑M1/49‑32 (MQ=255) gCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatc < 1:7661609‑M1/49‑32 (MQ=255) gCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatc < 1:937527‑M1/49‑32 (MQ=255) gCCGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatc < 1:427221‑M1/49‑32 (MQ=255) ccGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 1:4809034‑M1/1‑17 (MQ=255) ccGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 1:1524232‑M1/1‑17 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcgca < 1:2426677‑M1/50‑35 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 1:7706990‑M1/1‑16 (MQ=255) cGAAGGAAGATTGAGTtacgccattgtcccaatcgtcttcctgaatcg > 1:724986‑M1/1‑16 (MQ=255) gaagggagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:3558384‑M1/1‑15 (MQ=255) gaaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:620869‑M1/1‑15 (MQ=255) gaaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:6492067‑M1/1‑15 (MQ=255) gaaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:1974302‑M1/1‑15 (MQ=255) gaaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:4363421‑M1/1‑15 (MQ=255) gaaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:3076627‑M1/1‑15 (MQ=255) aaggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:3815611‑M1/1‑14 (MQ=255) aggaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcag > 1:7914754‑M1/1‑13 (MQ=255) gaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagc < 1:8253690‑M1/50‑40 (MQ=255) gaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagc < 1:5223917‑M1/50‑40 (MQ=255) gaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagc < 1:4131476‑M1/50‑40 (MQ=255) gaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagc < 1:3970586‑M1/50‑40 (MQ=255) gaagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagc > 1:7690810‑M1/1‑11 (MQ=255) aagATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg < 1:206853‑M1/50‑41 (MQ=255) agATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcg > 1:6455667‑M1/1‑9 (MQ=255) gATTGAGTtacgccattgtcccaatggtcttcctgaatcgcagcagcgca < 1:3029031‑M1/50‑43 (MQ=255) gATTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgc > 1:836146‑M1/1‑8 (MQ=255) aTTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaa > 1:6346522‑M1/1‑7 (MQ=255) aTTGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaa > 1:4153178‑M1/1‑7 (MQ=255) ttGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaat < 1:7628132‑M1/50‑45 (MQ=255) ttGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaat < 1:3267193‑M1/50‑45 (MQ=255) tGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg > 1:7054528‑M1/1‑5 (MQ=255) tGAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg > 1:3084184‑M1/1‑5 (MQ=255) gAGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatg < 1:6420468‑M1/49‑46 (MQ=255) aGTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggt < 1:2371020‑M1/50‑48 (MQ=255) gTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg < 1:5979462‑M1/50‑49 (MQ=255) gTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg < 1:5921777‑M1/50‑49 (MQ=255) gTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggtg < 1:3903357‑M1/50‑49 (MQ=255) gTtacgccattgtcccaatcgtcttcctgaatcgcagcagcgcaatggt > 1:1649461‑M1/1‑2 (MQ=255) | GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTCTATTATTGGGTCCTTTGGTGAACGATCAACAAAGGGCCACTAGCACA > NC_000913/3618943‑3619039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |