BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,618,992	Δ6,688 bp		rhsB–[yhhJ]	rhsB, yhhH, yhhI, [yhhJ]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3618992	3625679	6688	97 [0]	[0] 94	rhsB–[yhhJ]	rhsB,yhhH,yhhI,[yhhJ]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3618991	0 (0.000)	94 (0.880)	51/96	0.1	100%	intergenic (+2/‑201)	nikR/rhsB	DNA‑binding transcriptional repressor NikR/rhs element protein RhsB
*	?	NC_000913	3625680 =	NA (NA)	94 (0.880)	51/96	0.1	100%	coding (1124/1125 nt)	yhhJ	ABC transporter family protein YhhJ

TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG  >  NC_000913/3625631‑3625727

gcggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtt                                                 <  1:862322‑M2/1‑1 (MQ=255)

gcggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtt                                                 <  1:2785188‑M2/1‑1 (MQ=255)

gcggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtt                                                 <  1:6215017‑M2/1‑1 (MQ=255)

  ggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTAc                                               <  1:1862947‑M2/3‑1 (MQ=255)

  ggcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTAc                                               >  1:3285049‑M2/48‑50 (MQ=255)

   gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg                                              <  1:3101497‑M2/4‑1 (MQ=255)

   gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg                                              <  1:1455215‑M2/4‑1 (MQ=255)

   gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg                                              >  1:8176085‑M2/47‑50 (MQ=255)

   gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg                                              <  1:225056‑M2/4‑1 (MQ=255)

   gcgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACg                                              <  1:547582‑M2/4‑1 (MQ=255)

    cgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc                                             >  1:1954292‑M2/46‑50 (MQ=255)

    cgtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc                                             >  1:5291095‑M2/46‑50 (MQ=255)

     gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGcc                                            <  1:5656333‑M2/6‑1 (MQ=255)

     gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGcc                                            <  1:373748‑M2/6‑1 (MQ=255)

     gtgcggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGc                                             >  1:305239‑M2/45‑49 (MQ=255)

        cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCGtt                                         <  1:4818003‑M2/9‑1 (MQ=255)

        cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt                                         >  1:2917226‑M2/42‑50 (MQ=255)

        cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt                                         >  1:97221‑M2/42‑50 (MQ=255)

        cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt                                         >  1:6668354‑M2/42‑50 (MQ=255)

        cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt                                         <  1:7544730‑M2/9‑1 (MQ=255)

        cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt                                         <  1:1031874‑M2/9‑1 (MQ=255)

        cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAtt                                         >  1:2799328‑M2/42‑50 (MQ=255)

        cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAt                                          <  1:1082347‑M2/8‑1 (MQ=255)

        cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAt                                          <  1:2801726‑M2/8‑1 (MQ=255)

        cggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCAt                                          <  1:6559687‑M2/8‑1 (MQ=255)

         ggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTg                                        <  1:2733202‑M2/10‑1 (MQ=255)

         ggcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTg                                        <  1:2495709‑M2/10‑1 (MQ=255)

          gcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGt                                       <  1:3528066‑M2/11‑1 (MQ=255)

          gcacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGt                                       <  1:8052420‑M2/11‑1 (MQ=255)

           cacgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTc                                      <  1:378941‑M2/12‑1 (MQ=255)

            acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc                                     >  1:5125179‑M2/38‑50 (MQ=255)

            acgggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTcc                                     <  1:922701‑M2/13‑1 (MQ=255)

               ggcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCaa                                  <  1:8158775‑M2/16‑1 (MQ=255)

                gcatttgcagtgcttgccgaaggcagattgagtTACGCCATTGTCCCAAt                                 >  1:7761825‑M2/34‑50 (MQ=255)

                gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt                                 >  1:6387542‑M2/34‑50 (MQ=255)

                gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt                                 <  1:2584137‑M2/17‑1 (MQ=255)

                gcatttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAAt                                 <  1:824655‑M2/17‑1 (MQ=255)

                 catttgcagtgcttgccgtaggaagattgagtTACGCCATTGTCCCAATc                                >  1:6373192‑M2/33‑50 (MQ=255)

                 catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc                                >  1:5404747‑M2/33‑50 (MQ=255)

                 catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc                                >  1:6860662‑M2/33‑50 (MQ=255)

                 catttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATc                                >  1:6206773‑M2/33‑50 (MQ=255)

                  atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg                               >  1:6168042‑M2/32‑50 (MQ=255)

                  atttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCg                               >  1:7558911‑M2/32‑50 (MQ=255)

                   tttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGt                              <  1:4285336‑M2/20‑1 (MQ=255)

                   tttgcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGt                              >  1:1919302‑M2/31‑50 (MQ=255)

                      gcagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCt                            <  1:6583150‑M2/22‑1 (MQ=255)

                       cagtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCtt                           <  1:5911151‑M2/23‑1 (MQ=255)

                        agtgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTcc                         >  1:3840146‑M2/26‑50 (MQ=255)

                          tgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTtccc                        >  1:4342120‑M2/24‑48 (MQ=255)

                          tgcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCt                        >  1:1704871‑M2/24‑49 (MQ=255)

                           gcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTg                       >  1:3060379‑M2/23‑49 (MQ=255)

                           gcttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTg                       >  1:2637516‑M2/23‑49 (MQ=255)

                            cttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGa                      <  1:7943805‑M2/28‑1 (MQ=255)

                             ttgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAAt                    >  1:3904957‑M2/21‑50 (MQ=255)

                              tgccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc                   >  1:636345‑M2/20‑50 (MQ=255)

                              tgccgaaggaagattgagtTACGCCATTGTCCAAATCGTCTTCCTGAATc                   >  1:1898264‑M2/20‑50 (MQ=255)

                               gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc                   <  1:7661609‑M2/31‑1 (MQ=255)

                               gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc                   <  1:427221‑M2/31‑1 (MQ=255)

                               gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc                   <  1:66013‑M2/31‑1 (MQ=255)

                               gccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATc                   <  1:937527‑M2/31‑1 (MQ=255)

                                ccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg                  >  1:4809034‑M2/18‑49 (MQ=255)

                                ccgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg                  >  1:1524232‑M2/18‑49 (MQ=255)

                                 cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgca                <  1:2426677‑M2/34‑1 (MQ=255)

                                 cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg                  >  1:7706990‑M2/17‑48 (MQ=255)

                                 cgaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCg                  >  1:724986‑M2/17‑48 (MQ=255)

                                  gaagggagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag               >  1:3558384‑M2/16‑50 (MQ=255)

                                  gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag               >  1:3076627‑M2/16‑50 (MQ=255)

                                  gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag               >  1:6492067‑M2/16‑50 (MQ=255)

                                  gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag               >  1:620869‑M2/16‑50 (MQ=255)

                                  gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag               >  1:1974302‑M2/16‑50 (MQ=255)

                                  gaaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag               >  1:4363421‑M2/16‑50 (MQ=255)

                                   aaggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag               >  1:3815611‑M2/15‑49 (MQ=255)

                                    aggaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag               >  1:7914754‑M2/14‑48 (MQ=255)

                                      gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc           <  1:8253690‑M2/39‑1 (MQ=255)

                                      gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc           <  1:3970586‑M2/39‑1 (MQ=255)

                                      gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc           <  1:4131476‑M2/39‑1 (MQ=255)

                                      gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc           <  1:5223917‑M2/39‑1 (MQ=255)

                                      gaagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc           >  1:7690810‑M2/12‑50 (MQ=255)

                                       aagattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg          <  1:206853‑M2/40‑1 (MQ=255)

                                        agattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcg          >  1:6455667‑M2/10‑49 (MQ=255)

                                         gattgagtTACGCCATTGTCCCAATGGTCTTCCTGAATCGCAGCAGCGCa        <  1:3029031‑M2/42‑1 (MQ=255)

                                         gattgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc         >  1:836146‑M2/9‑49 (MQ=255)

                                          attgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa       >  1:4153178‑M2/8‑50 (MQ=255)

                                          attgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa       >  1:6346522‑M2/8‑50 (MQ=255)

                                           ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt      <  1:7628132‑M2/44‑1 (MQ=255)

                                           ttgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt      <  1:3267193‑M2/44‑1 (MQ=255)

                                            tgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg     >  1:7054528‑M2/6‑50 (MQ=255)

                                            tgagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg     >  1:3084184‑M2/6‑50 (MQ=255)

                                             gagtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg     <  1:6420468‑M2/45‑1 (MQ=255)

                                              agtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt   <  1:2371020‑M2/47‑1 (MQ=255)

                                               gtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt   >  1:1649461‑M2/3‑49 (MQ=255)

                                               gtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTg  <  1:5921777‑M2/48‑1 (MQ=255)

                                               gtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTg  <  1:5979462‑M2/48‑1 (MQ=255)

                                               gtTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTg  <  1:3903357‑M2/48‑1 (MQ=255)

TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG  >  NC_000913/3625631‑3625727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`