| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 131 [0] | [0] 129 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 127 (1.190) | 75/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
Only 100 of 131 total aligned reads displayed.
CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCA > NC_000913/3761943‑3762040 | cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC < 1:3478690‑M1/50‑1 (MQ=255)cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC > 1:1531594‑M1/1‑50 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:3350118‑M1/1‑49 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:8274092‑M1/1‑49 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt < 1:3195338‑M1/50‑2 (MQ=255) gacgaGTTTCATGCCGAGTCCTATGTGCGAGGAAAAATATCAGTATGGCt < 1:5408466‑M1/50‑2 (MQ=255) acgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:4425952‑M1/1‑48 (MQ=255) cgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtca < 1:4164096‑M1/50‑4 (MQ=255) gaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:913214‑M1/1‑46 (MQ=255) gaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:7416797‑M1/1‑46 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCttaat < 1:1520202‑M1/50‑6 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat > 1:5754773‑M1/1‑44 (MQ=255) tttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatga > 1:2747581‑M1/1‑43 (MQ=255) ttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat > 1:6102757‑M1/1‑42 (MQ=255) tCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc > 1:1182045‑M1/1‑41 (MQ=255) cATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc > 1:2999728‑M1/1‑40 (MQ=255) cATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc < 1:3806554‑M1/49‑10 (MQ=255) cATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc < 1:8107515‑M1/49‑10 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcca < 1:2830649‑M1/50‑12 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcca < 1:2206114‑M1/50‑12 (MQ=255) tGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaa < 1:2595421‑M1/50‑13 (MQ=255) gCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa > 1:3308099‑M1/1‑37 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa < 1:2517257‑M1/49‑14 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa < 1:1061901‑M1/49‑14 (MQ=255) cGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata < 1:3571832‑M1/50‑16 (MQ=255) cGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata < 1:5929819‑M1/50‑16 (MQ=255) cGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat > 1:2317649‑M1/1‑35 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataa < 1:7744882‑M1/50‑17 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:3536750‑M1/1‑34 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaa < 1:6922896‑M1/50‑18 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaa < 1:756277‑M1/50‑18 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:4106645‑M1/1‑33 (MQ=255) gTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaag < 1:422213‑M1/50‑19 (MQ=255) gTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:180658‑M1/1‑32 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:2249521‑M1/50‑20 (MQ=255) ccTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga > 1:6983705‑M1/1‑30 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:5027221‑M1/50‑22 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:1578056‑M1/50‑22 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagat < 1:5236434‑M1/49‑21 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagat > 1:7021288‑M1/1‑29 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagat > 1:3193972‑M1/1‑29 (MQ=255) tttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa > 1:191794‑M1/1‑28 (MQ=255) ttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat > 1:4244258‑M1/1‑27 (MQ=255) ttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat > 1:7187586‑M1/1‑27 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaattatccaaataaagataat < 1:4952047‑M1/49‑24 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa < 1:8307865‑M1/48‑23 (MQ=255) gtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg > 1:478319‑M1/1‑25 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca < 1:2137344‑M1/50‑27 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca > 1:6884826‑M1/1‑24 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca < 1:1998011‑M1/50‑27 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca < 1:7546628‑M1/50‑27 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgc < 1:6695776‑M1/49‑26 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgc < 1:2219000‑M1/49‑26 (MQ=255) gCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat > 1:7876047‑M1/1‑23 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:5935566‑M1/1‑22 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:181070‑M1/49‑28 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:5397533‑M1/49‑28 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcc < 1:3888426‑M1/50‑30 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcca < 1:3382752‑M1/50‑31 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcca < 1:6955305‑M1/50‑31 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:641656‑M1/1‑20 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:7962041‑M1/1‑20 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:1143603‑M1/1‑20 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:4607239‑M1/1‑20 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag < 1:6810967‑M1/50‑32 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccagc < 1:4659793‑M1/50‑33 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccagc < 1:7212703‑M1/50‑33 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct > 1:2482223‑M1/1‑17 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct > 1:5939771‑M1/1‑17 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct > 1:6084940‑M1/1‑17 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg > 1:3183711‑M1/1‑16 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg < 1:1844164‑M1/50‑35 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg < 1:1690530‑M1/50‑35 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:252696‑M1/1‑14 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt < 1:4034633‑M1/50‑37 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtc < 1:8209379‑M1/50‑38 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtc < 1:5740246‑M1/50‑38 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:3041309‑M1/1‑13 (MQ=255) tatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca < 1:1334884‑M1/50‑39 (MQ=255) atCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat > 1:5824168‑M1/1‑11 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt < 1:1349629‑M1/50‑41 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt < 1:2401589‑M1/50‑41 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt < 1:2583564‑M1/50‑41 (MQ=255) cAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc > 1:2708963‑M1/1‑9 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct < 1:6275413‑M1/50‑43 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct < 1:8058153‑M1/50‑43 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc < 1:3857431‑M1/49‑42 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc < 1:1364038‑M1/49‑42 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:1775910‑M1/50‑44 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:3949770‑M1/50‑45 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:3636207‑M1/1‑6 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:770903‑M1/1‑4 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:1764068‑M1/1‑4 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag < 1:2107039‑M1/49‑46 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag < 1:7403761‑M1/49‑46 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:4967367‑M1/1‑2 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:6315096‑M1/1‑2 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:2207517‑M1/1‑2 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:6605579‑M1/1‑2 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag < 1:1177099‑M1/50‑49 (MQ=255) | CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCA > NC_000913/3761943‑3762040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |