| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 131 [0] | [0] 129 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 127 (1.190) | 75/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
Only 100 of 129 total aligned reads displayed.
ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC > NC_000913/3770194‑3770291 | gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct > 1:3350118‑M2/50‑50 (MQ=255)gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct > 1:8274092‑M2/50‑50 (MQ=255)gacgagtttcatgccgagtcctatgtgcgaggaaaaatatcagtatggct < 1:5408466‑M2/1‑1 (MQ=255) acgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct > 1:4425952‑M2/49‑49 (MQ=255) gagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa > 1:913214‑M2/47‑50 (MQ=255) gagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa > 1:7038548‑M2/47‑50 (MQ=255) agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTTAAt < 1:1520202‑M2/5‑1 (MQ=255) agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt < 1:2595415‑M2/5‑1 (MQ=255) agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt > 1:6057088‑M2/46‑50 (MQ=255) gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATg < 1:2219373‑M2/6‑1 (MQ=255) ttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt > 1:6102757‑M2/43‑50 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 1:4406136‑M2/42‑50 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 1:1182045‑M2/42‑50 (MQ=255) catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 1:2999728‑M2/41‑49 (MQ=255) catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 1:2822617‑M2/41‑49 (MQ=255) catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc < 1:3806554‑M2/9‑1 (MQ=255) catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc < 1:8107515‑M2/9‑1 (MQ=255) catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 1:6394815‑M2/41‑49 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc < 1:2162974‑M2/10‑1 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa < 1:2830649‑M2/11‑1 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa < 1:2206114‑M2/11‑1 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa < 1:1799485‑M2/11‑1 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa < 1:6954660‑M2/11‑1 (MQ=255) tgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaa < 1:2595421‑M2/12‑1 (MQ=255) gccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa > 1:3308099‑M2/38‑50 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa < 1:1061901‑M2/13‑1 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa < 1:2517257‑M2/13‑1 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt > 1:2317649‑M2/36‑49 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa < 1:3571832‑M2/15‑1 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa < 1:5186993‑M2/15‑1 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa < 1:5929819‑M2/15‑1 (MQ=255) gagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaa < 1:7744882‑M2/16‑1 (MQ=255) gagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa > 1:3536750‑M2/35‑49 (MQ=255) agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa < 1:756277‑M2/17‑1 (MQ=255) agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa > 1:4106645‑M2/34‑48 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa > 1:180658‑M2/33‑47 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg < 1:422213‑M2/18‑1 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa < 1:5879559‑M2/19‑1 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa < 1:2249521‑M2/19‑1 (MQ=255) cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa > 1:6983705‑M2/31‑49 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt > 1:3193972‑M2/30‑49 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt < 1:5236434‑M2/20‑1 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa < 1:4110541‑M2/21‑1 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa < 1:5027221‑M2/21‑1 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa < 1:1578056‑M2/21‑1 (MQ=255) tttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa > 1:191794‑M2/29‑50 (MQ=255) ttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt > 1:7187586‑M2/28‑50 (MQ=255) ttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt > 1:4244258‑M2/28‑50 (MQ=255) ttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt > 1:6782021‑M2/28‑50 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa < 1:8307865‑M2/22‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt < 1:1949187‑M2/23‑1 (MQ=255) gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg < 1:1624065‑M2/24‑1 (MQ=255) gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg > 1:478319‑M2/26‑49 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 1:5701259‑M2/25‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 1:2219000‑M2/25‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 1:6695776‑M2/25‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa > 1:4923315‑M2/25‑50 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa > 1:3217912‑M2/25‑50 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa < 1:1998011‑M2/26‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa < 1:2137344‑M2/26‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa > 1:6884826‑M2/25‑50 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa < 1:7546628‑M2/26‑1 (MQ=255) gcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt > 1:7876047‑M2/24‑50 (MQ=255) gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATcc < 1:3888426‑M2/29‑1 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:641656‑M2/21‑48 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:7962041‑M2/21‑48 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:1143603‑M2/21‑48 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCa < 1:3382752‑M2/30‑1 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCa < 1:6955305‑M2/30‑1 (MQ=255) ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg < 1:6810967‑M2/31‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc < 1:7212703‑M2/32‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc < 1:4659793‑M2/32‑1 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt > 1:5939771‑M2/18‑50 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt > 1:6084940‑M2/18‑50 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt > 1:2482223‑M2/18‑50 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg < 1:1844164‑M2/34‑1 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg > 1:3183711‑M2/17‑50 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg < 1:1690530‑M2/34‑1 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt < 1:4034633‑M2/36‑1 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc < 1:8209379‑M2/37‑1 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc < 1:5740246‑M2/37‑1 (MQ=255) tatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCa < 1:1334884‑M2/38‑1 (MQ=255) atcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt > 1:5824168‑M2/12‑50 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt < 1:2583564‑M2/40‑1 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt < 1:1349629‑M2/40‑1 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt < 1:743214‑M2/40‑1 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt < 1:312984‑M2/39‑1 (MQ=255) cagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc > 1:2708963‑M2/10‑50 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc < 1:1364038‑M2/41‑1 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc < 1:3857431‑M2/41‑1 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt < 1:8058153‑M2/42‑1 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:3915971‑M2/9‑50 (MQ=255) gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCtt < 1:1775910‑M2/43‑1 (MQ=255) tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:3636207‑M2/7‑48 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag < 1:7403761‑M2/45‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:4967367‑M2/3‑50 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag < 1:1177099‑M2/48‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:6315096‑M2/3‑50 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcagc < 1:2476605‑M2/49‑1 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:7717876‑M2/2‑49 (MQ=255) | ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC > NC_000913/3770194‑3770291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |