| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 134 [0] | [0] 134 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 132 (1.240) | 68/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 134 total aligned reads displayed.
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGC > NC_000913/4496627‑4496723 | aTGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:2256080‑M1/49‑1 (MQ=255)aTGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:5874099‑M1/49‑1 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga < 1:6066875‑M1/50‑3 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga < 1:841277‑M1/50‑3 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAg > 1:7136544‑M1/1‑48 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAg > 1:3881433‑M1/1‑48 (MQ=255) ggTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga > 1:3984234‑M1/1‑47 (MQ=255) gTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaa < 1:7183790‑M1/50‑5 (MQ=255) gTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaa < 1:6530787‑M1/49‑4 (MQ=255) tATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat < 1:629018‑M1/50‑6 (MQ=255) tATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat < 1:5755956‑M1/50‑6 (MQ=255) tATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat < 1:4236813‑M1/50‑6 (MQ=255) aTTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat > 1:6380230‑M1/1‑44 (MQ=255) aTTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat > 1:3314753‑M1/1‑44 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatc < 1:8254980‑M1/49‑7 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatc < 1:203165‑M1/49‑7 (MQ=255) ttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca > 1:1207095‑M1/1‑42 (MQ=255) ccGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcaca < 1:2973816‑M1/49‑10 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagg < 1:3431766‑M1/50‑12 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagg < 1:7665129‑M1/50‑12 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag < 1:3418163‑M1/49‑11 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag < 1:3200315‑M1/49‑11 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag < 1:1447984‑M1/49‑11 (MQ=255) ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga > 1:7707818‑M1/1‑38 (MQ=255) ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga < 1:2191331‑M1/50‑13 (MQ=255) ttCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggaca > 1:3025075‑M1/1‑36 (MQ=255) ttCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggaca > 1:1741662‑M1/1‑36 (MQ=255) tCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacat > 1:7348866‑M1/1‑35 (MQ=255) tCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacat > 1:2193425‑M1/1‑35 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt > 1:3647842‑M1/1‑34 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt > 1:3082055‑M1/1‑34 (MQ=255) gatgatGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt < 1:6192463‑M1/49‑17 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattg < 1:4231148‑M1/50‑18 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattg > 1:199751‑M1/1‑33 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattg > 1:1219396‑M1/1‑33 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattg > 1:1366464‑M1/1‑33 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt < 1:7008660‑M1/49‑17 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt < 1:5428147‑M1/49‑17 (MQ=255) aTAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc > 1:5304887‑M1/1‑32 (MQ=255) aTAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc > 1:5072759‑M1/1‑32 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgct < 1:4565065‑M1/50‑20 (MQ=255) aaTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgct > 1:6818155‑M1/1‑30 (MQ=255) aaTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgct > 1:3836494‑M1/1‑30 (MQ=255) aaTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgct > 1:5023822‑M1/1‑30 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgcta < 1:2265266‑M1/49‑21 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgcta < 1:238509‑M1/49‑21 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgcta < 1:1636481‑M1/49‑21 (MQ=255) tGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaat > 1:7946401‑M1/1‑28 (MQ=255) cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgc < 1:4886037‑M1/50‑25 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg > 1:5763053‑M1/1‑23 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg > 1:7880207‑M1/1‑23 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg > 1:6067144‑M1/1‑23 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgct < 1:206134‑M1/48‑26 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgct < 1:4378824‑M1/48‑26 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg < 1:5704207‑M1/49‑28 (MQ=255) aCCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggta > 1:3083746‑M1/1‑21 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac < 1:3673557‑M1/50‑31 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac < 1:1770395‑M1/50‑31 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac < 1:3254345‑M1/50‑31 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac < 1:6250464‑M1/50‑31 (MQ=255) cAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg > 1:7432772‑M1/1‑19 (MQ=255) cAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg > 1:1514816‑M1/1‑19 (MQ=255) aCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgca < 1:1729037‑M1/50‑34 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgcaa > 1:5441724‑M1/1‑16 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgcaa < 1:8177021‑M1/50‑35 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgcaa > 1:648138‑M1/1‑16 (MQ=255) agggagggAATACGAgaaatcacaggacattgctaatgctggtacgcaat < 1:2685892‑M1/50‑36 (MQ=255) agggagggAATACGAgaaatcacaggacattgctaatgctggtacgcaat < 1:6292867‑M1/50‑36 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaata > 1:7784188‑M1/1‑14 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaata > 1:6774466‑M1/1‑14 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaata < 1:1804309‑M1/50‑37 (MQ=255) ggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat > 1:6353016‑M1/1‑13 (MQ=255) ggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat < 1:6335792‑M1/50‑38 (MQ=255) ggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat > 1:6649388‑M1/1‑13 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatt < 1:4804482‑M1/50‑39 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat > 1:7569220‑M1/1‑12 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta < 1:8312342‑M1/50‑40 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta > 1:3914220‑M1/1‑11 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta < 1:507180‑M1/50‑40 (MQ=255) gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac < 1:4477459‑M1/50‑41 (MQ=255) ggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacc < 1:8206787‑M1/50‑42 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacct > 1:726829‑M1/1‑8 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg < 1:1787233‑M1/50‑44 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg < 1:7416121‑M1/50‑44 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg < 1:4029695‑M1/50‑44 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacct > 1:7464036‑M1/1‑7 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacct > 1:2992662‑M1/1‑7 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctga < 1:7689852‑M1/50‑45 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctga < 1:6706139‑M1/50‑45 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg > 1:2898108‑M1/1‑6 (MQ=255) tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa < 1:2193134‑M1/50‑46 (MQ=255) cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaagc < 1:8059986‑M1/50‑48 (MQ=255) cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaagc > 1:3430064‑M1/1‑3 (MQ=255) cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaagc < 1:3017274‑M1/50‑48 (MQ=255) cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaag < 1:6011978‑M1/49‑47 (MQ=255) cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaag < 1:7986445‑M1/49‑47 (MQ=255) cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaag < 1:120596‑M1/49‑47 (MQ=255) gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagct < 1:7249336‑M1/50‑49 (MQ=255) gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagct < 1:5599158‑M1/50‑49 (MQ=255) gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagc > 1:3045327‑M1/1‑2 (MQ=255) | ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGC > NC_000913/4496627‑4496723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |