| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 134 [0] | [0] 134 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 132 (1.240) | 68/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 134 total aligned reads displayed.
CAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549664‑4549760 | tggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga < 1:841277‑M2/2‑1 (MQ=255)tggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga < 1:6066875‑M2/2‑1 (MQ=255)tggtatttccggttcgataatgcttgtaccaacagggagggaatacgag > 1:7136544‑M2/49‑49 (MQ=255)tggtatttccggttcgataatgcttgtaccaacagggagggaatacgag > 1:3881433‑M2/49‑49 (MQ=255) ggtatttccggttcgataatgcttgtaccaacagggagggaatacgaga > 1:3984234‑M2/48‑49 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaaa < 1:7183790‑M2/4‑1 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaa < 1:6530787‑M2/3‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt < 1:629018‑M2/5‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt < 1:4236813‑M2/5‑1 (MQ=255) atttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:6380230‑M2/45‑49 (MQ=255) atttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:3314753‑M2/45‑49 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATc < 1:8254980‑M2/6‑1 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATc < 1:203165‑M2/6‑1 (MQ=255) ttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca > 1:1207095‑M2/43‑49 (MQ=255) ccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcaca < 1:2973816‑M2/9‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:3431766‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAgg < 1:7665129‑M2/11‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg < 1:3418163‑M2/10‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg < 1:3200315‑M2/10‑1 (MQ=255) cggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg < 1:1447984‑M2/10‑1 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa < 1:2191331‑M2/12‑1 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:7707818‑M2/39‑50 (MQ=255) ttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa > 1:1741662‑M2/37‑50 (MQ=255) ttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa > 1:3025075‑M2/37‑50 (MQ=255) tcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt > 1:7348866‑M2/36‑50 (MQ=255) tcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAt > 1:2193425‑M2/36‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:3082055‑M2/35‑50 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:3647842‑M2/35‑50 (MQ=255) gatgatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt < 1:6192463‑M2/16‑1 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt < 1:7008660‑M2/16‑1 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt < 1:5428147‑M2/16‑1 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg > 1:199751‑M2/34‑50 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg < 1:4231148‑M2/17‑1 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg > 1:1219396‑M2/34‑50 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg > 1:1366464‑M2/34‑50 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:5304887‑M2/33‑50 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:5072759‑M2/33‑50 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt < 1:4565065‑M2/19‑1 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt < 1:5763005‑M2/19‑1 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:6818155‑M2/31‑49 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:5023822‑M2/31‑49 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:3836494‑M2/31‑49 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:1636481‑M2/20‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:2265266‑M2/20‑1 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:238509‑M2/20‑1 (MQ=255) tgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAAt > 1:7946401‑M2/29‑50 (MQ=255) cttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGc < 1:4886037‑M2/24‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:4378824‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:206134‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:5763053‑M2/24‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:6067144‑M2/24‑50 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg > 1:7880207‑M2/24‑50 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:5704207‑M2/27‑1 (MQ=255) accaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTa > 1:3083746‑M2/22‑50 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:3254345‑M2/30‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:1770395‑M2/30‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:3673557‑M2/30‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:6250464‑M2/30‑1 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:7432772‑M2/20‑50 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:1514816‑M2/20‑50 (MQ=255) acagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCa < 1:1729037‑M2/33‑1 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:5441724‑M2/17‑50 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa < 1:8177021‑M2/34‑1 (MQ=255) cagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCaa > 1:648138‑M2/17‑50 (MQ=255) agggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAat < 1:6292867‑M2/35‑1 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAata > 1:7784188‑M2/15‑50 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAata > 1:6774466‑M2/15‑50 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAata < 1:1804309‑M2/36‑1 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat < 1:6335792‑M2/37‑1 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:6353016‑M2/14‑50 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:2684551‑M2/14‑50 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:6649388‑M2/14‑50 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:7569220‑M2/13‑49 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATAtt < 1:4804482‑M2/38‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:507180‑M2/39‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:8312342‑M2/39‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa > 1:3914220‑M2/12‑50 (MQ=255) gggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAc < 1:4477459‑M2/40‑1 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAcc < 1:8206787‑M2/41‑1 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt > 1:726829‑M2/9‑50 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt > 1:7464036‑M2/8‑49 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt > 1:2992662‑M2/8‑49 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:4029695‑M2/43‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:7416121‑M2/43‑1 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:1787233‑M2/43‑1 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg > 1:2898108‑M2/7‑49 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGa < 1:6706139‑M2/44‑1 (MQ=255) atacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGa < 1:7689852‑M2/44‑1 (MQ=255) tacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGaa < 1:2193134‑M2/45‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg < 1:7986445‑M2/46‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg < 1:120596‑M2/46‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg < 1:6011978‑M2/46‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc < 1:3017274‑M2/47‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc < 1:8059986‑M2/47‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:3430064‑M2/4‑50 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:3045327‑M2/3‑49 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:7249336‑M2/48‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:5599158‑M2/48‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa > 1:2768556/1‑49 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa > 1:5724523/1‑49 (MQ=255) | CAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549664‑4549760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |