| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 83 [0] | [0] 85 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 82 (0.770) | 47/96 | 0.2 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
CCTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770564‑770662 | gcgatgattttcgctgcgctatcagggtaaattatagtcatcggtattat < 1:4445582‑M2/1‑1 (MQ=255) cgatgattttcgctgcgctatcagggtaaattatagtcatcggtattata < 1:4175234‑M2/2‑1 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:6718058‑M2/48‑50 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:4878337‑M2/48‑50 (MQ=255) gatgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAg > 1:2585981‑M2/48‑50 (MQ=255) atgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc < 1:6169912‑M2/4‑1 (MQ=255) tgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCa < 1:2675961‑M2/5‑1 (MQ=255) cgattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGc > 1:3004855‑M2/46‑49 (MQ=255) gattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa > 1:5328323‑M2/45‑50 (MQ=255) gattttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa > 1:1559237‑M2/45‑50 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCaa < 1:4470323‑M2/6‑1 (MQ=255) attttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt > 1:750955‑M2/44‑50 (MQ=255) ttttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAAt > 1:943518‑M2/43‑49 (MQ=255) tttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc > 1:4640906‑M2/42‑49 (MQ=255) tttcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATc > 1:8261873‑M2/42‑49 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa < 1:178319‑M2/10‑1 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa < 1:6880173‑M2/10‑1 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa < 1:435804‑M2/10‑1 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa < 1:2755942‑M2/10‑1 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa < 1:1036458‑M2/10‑1 (MQ=255) tcgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCaa < 1:7945444‑M2/10‑1 (MQ=255) cgctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc > 1:3974461‑M2/39‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAAtcaaatc > 1:4750969‑M2/38‑48 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:7886729‑M2/13‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 1:7783764‑M2/38‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:1390693‑M2/13‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc > 1:5332923‑M2/38‑50 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:729873‑M2/13‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAcc < 1:6491303‑M2/13‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc < 1:7551498‑M2/12‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc < 1:1032473‑M2/12‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc < 1:4262621‑M2/12‑1 (MQ=255) gctgcgctatcagggtaaattatagtcatcggtattaTAGCAATCAAAc < 1:6598643‑M2/12‑1 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGaa < 1:2725883‑M2/16‑1 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGaa < 1:897730‑M2/16‑1 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg < 1:7175261‑M2/17‑1 (MQ=255) cgctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAg < 1:3011220‑M2/17‑1 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc < 1:3644006‑M2/18‑1 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:3541446‑M2/33‑50 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc > 1:7464288‑M2/33‑50 (MQ=255) gctatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGc < 1:2464680‑M2/18‑1 (MQ=255) tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:1187048‑M2/31‑50 (MQ=255) tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:5986028‑M2/31‑50 (MQ=255) tatcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca > 1:5328314‑M2/31‑50 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:5071465‑M2/29‑50 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca < 1:5333171‑M2/20‑1 (MQ=255) tcagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCca < 1:2182103‑M2/20‑1 (MQ=255) cagggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCcaca > 1:3186145‑M2/28‑49 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata < 1:1788143‑M2/24‑1 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata > 1:5755559‑M2/27‑50 (MQ=255) agggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACata > 1:4454851‑M2/27‑50 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat < 1:4371228‑M2/25‑1 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat > 1:1659936‑M2/26‑50 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat < 1:1650856‑M2/25‑1 (MQ=255) gggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACatat > 1:7385281‑M2/26‑50 (MQ=255) ggtaaattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATg > 1:3213516‑M2/25‑50 (MQ=255) aattatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGcgcg < 1:1911625‑M2/30‑1 (MQ=255) ttatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc < 1:7818616‑M2/32‑1 (MQ=255) ttatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc < 1:2613707‑M2/32‑1 (MQ=255) tatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:6848672‑M2/18‑49 (MQ=255) tatagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:7590058‑M2/18‑49 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:128738‑M2/16‑47 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCa < 1:1661822‑M2/34‑1 (MQ=255) tagtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAg < 1:6726349‑M2/35‑1 (MQ=255) agtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGc > 1:785121‑M2/15‑46 (MQ=255) gtcatcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAt < 1:6716962‑M2/37‑1 (MQ=255) catcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg > 1:5054005‑M2/12‑50 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgt > 1:1553508‑M2/11‑50 (MQ=255) atcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttg < 1:1589940‑M2/39‑1 (MQ=255) tcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt < 1:3786361‑M2/41‑1 (MQ=255) tcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt < 1:7262216‑M2/41‑1 (MQ=255) tcggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt > 1:4628407‑M2/10‑50 (MQ=255) cggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgtt > 1:38578‑M2/9‑49 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgttg < 1:2026878‑M2/42‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGAttgttg < 1:2653745‑M2/42‑1 (MQ=255) ggtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGa > 1:1616449‑M2/8‑50 (MQ=255) gtattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGAc < 1:1937323‑M2/44‑1 (MQ=255) tattaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa < 1:1253252‑M2/45‑1 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACaaa < 1:6089358‑M2/47‑1 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa > 1:5091245‑M2/4‑48 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa > 1:6435395‑M2/4‑48 (MQ=255) ttaTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACa > 1:5920715‑M2/4‑48 (MQ=255) tAGCAATCAAACCGAAGCTACATATGCGCGGCCAGATTGTTGACAAAgg < 1:3308637/49‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAggg < 1:3323055/50‑1 (MQ=255) tAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAgg < 1:1863258/49‑1 (MQ=255) | CCTTTTTTACCCGGCCAGTCACGGACGTTCAGTTACCGGCTTGCCTGAATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAGGG > NC_000913/770564‑770662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |