| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 130 [0] | [0] 130 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 115 (1.180) | 61/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 130 total aligned reads displayed.
ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 | aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:7271738‑M1/1‑50 (MQ=255)aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:27694‑M1/1‑50 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc > 1:7101465‑M1/1‑49 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 1:5230796‑M1/50‑2 (MQ=255) cagccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:7616257‑M1/1‑48 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctc < 1:3783994‑M1/50‑4 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:7540223‑M1/1‑47 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:4974261‑M1/1‑47 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:5951915‑M1/1‑47 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:226864‑M1/1‑47 (MQ=255) gccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctca > 1:3917453‑M1/1‑46 (MQ=255) gccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctca > 1:217842‑M1/1‑46 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat > 1:4455977‑M1/1‑45 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:355445‑M1/1‑44 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:5820902‑M1/1‑44 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:5183986‑M1/1‑43 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:7034272‑M1/1‑43 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 1:2458917‑M1/1‑41 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 1:140417‑M1/1‑41 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc > 1:2860447‑M1/1‑38 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc < 1:4655318‑M1/50‑14 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc < 1:6593348‑M1/49‑13 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:8182486‑M1/50‑15 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:6276842‑M1/50‑15 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt > 1:4212660‑M1/1‑35 (MQ=255) aGGTGTGTCTGCGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:1505348‑M1/1‑34 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:2938750‑M1/1‑34 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc < 1:7916384‑M1/50‑17 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct < 1:8334027‑M1/50‑18 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:1836074‑M1/1‑33 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:3497885‑M1/50‑19 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:5472884‑M1/50‑19 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:2637485‑M1/1‑32 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:1094981‑M1/1‑32 (MQ=255) tgtgtCTGAGGTCATGGAAACGGGAATCTTCctcatttatgcccgtctta > 1:3373647‑M1/1‑31 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta > 1:6280741‑M1/1‑31 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:5501304‑M1/50‑20 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:5557531‑M1/50‑20 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:5560276‑M1/50‑20 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:3618214‑M1/50‑20 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta > 1:6123666‑M1/1‑31 (MQ=255) gtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat > 1:2820087‑M1/1‑30 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:193017‑M1/49‑21 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:6685467‑M1/49‑21 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg < 1:4373738‑M1/50‑24 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:4639253‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:6466609‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:4423203‑M1/49‑23 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:2418560‑M1/49‑23 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 1:4097816‑M1/1‑24 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 1:3608987‑M1/1‑24 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttc < 1:7312010‑M1/50‑28 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttc > 1:3014156‑M1/1‑23 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 1:3070618‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 1:227083‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt < 1:7466820‑M1/48‑26 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc > 1:3949447‑M1/1‑22 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg > 1:6783195‑M1/1‑21 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg > 1:3466557‑M1/1‑21 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg < 1:5388174‑M1/50‑30 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc > 1:1713942‑M1/1‑20 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:4287489‑M1/1‑19 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:1224240‑M1/1‑19 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt > 1:575336‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt < 1:4357331‑M1/50‑33 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt > 1:4304443‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:6388620‑M1/49‑32 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:4448095‑M1/49‑32 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:1499891‑M1/49‑32 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:1169199‑M1/49‑32 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:7210090‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:1184231‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg < 1:7848990‑M1/49‑35 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc < 1:2823944‑M1/50‑38 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct < 1:900525‑M1/50‑39 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt < 1:8179994‑M1/50‑40 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt < 1:5135783‑M1/50‑40 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:1413698‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:793795‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:7810612‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:4475750‑M1/1‑10 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:4510775‑M1/1‑10 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:1328928‑M1/1‑8 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac < 1:5105734‑M1/50‑43 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:3514254‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:1660028‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:5181652‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:3161141‑M1/1‑7 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:6985125‑M1/1‑7 (MQ=255) tCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:5207356‑M1/1‑5 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 1:8127410‑M1/1‑4 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 1:1472803‑M1/1‑4 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:2761376‑M1/1‑3 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:4572689‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:6366072‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:6719475‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:5844914‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 1:2892741‑M1/49‑49 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 1:866252‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 1:5485378‑M1/47‑47 (MQ=255) | ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |