| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 130 [0] | [0] 130 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 115 (1.180) | 61/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 130 total aligned reads displayed.
CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586060‑586158 | tcagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcc < 1:5230796‑M2/1‑1 (MQ=255) cagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:7616257‑M2/49‑50 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:4974261‑M2/48‑49 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:226864‑M2/48‑49 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:7540223‑M2/48‑49 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:5951915‑M2/48‑49 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTc < 1:3783994‑M2/3‑1 (MQ=255) gccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCa > 1:217842‑M2/47‑50 (MQ=255) gccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCa > 1:3917453‑M2/47‑50 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt > 1:4455977‑M2/46‑50 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt > 1:2832909‑M2/46‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:355445‑M2/45‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:5820902‑M2/45‑50 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:7034272‑M2/44‑49 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:5183986‑M2/44‑49 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt > 1:140417‑M2/42‑50 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt > 1:2458917‑M2/42‑50 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGccc < 1:7163286‑M2/13‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGccc < 1:4655318‑M2/13‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGcc < 1:6593348‑M2/12‑1 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg < 1:6276842‑M2/14‑1 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg < 1:8182486‑M2/14‑1 (MQ=255) caggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGt > 1:4212660‑M2/36‑50 (MQ=255) aggtgtgtctgcggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:1505348‑M2/35‑50 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:2938750‑M2/35‑50 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc < 1:7916384‑M2/16‑1 (MQ=255) ggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt < 1:8334027‑M2/17‑1 (MQ=255) ggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt > 1:1836074‑M2/34‑50 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCtt < 1:5472884‑M2/18‑1 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCtt < 1:3497885‑M2/18‑1 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt > 1:2637485‑M2/33‑49 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCt > 1:1094981‑M2/33‑49 (MQ=255) tgtgtctgaggtcatggaaacgggaatcttcCTCATTTATGCCCGTCTTa > 1:3373647‑M2/32‑50 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa > 1:6280741‑M2/32‑50 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa < 1:5560276‑M2/19‑1 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa < 1:5557531‑M2/19‑1 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa < 1:5501304‑M2/19‑1 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa > 1:6123666‑M2/32‑50 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa < 1:3618214‑M2/19‑1 (MQ=255) gtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt > 1:2820087‑M2/31‑50 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 1:193017‑M2/20‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 1:6685467‑M2/20‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc < 1:2418560‑M2/22‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc < 1:4423203‑M2/22‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCg > 1:6466609‑M2/28‑50 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCg < 1:4373738‑M2/23‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCg > 1:4639253‑M2/28‑50 (MQ=255) gaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt > 1:4097816‑M2/25‑50 (MQ=255) gaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt > 1:3608987‑M2/25‑50 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt < 1:227083‑M2/26‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt < 1:3070618‑M2/26‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt < 1:7466820‑M2/25‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTc < 1:7312010‑M2/27‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTc > 1:3014156‑M2/24‑50 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc > 1:3949447‑M2/23‑50 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg > 1:3466557‑M2/22‑50 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg > 1:6783195‑M2/22‑50 (MQ=255) gtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCg < 1:5388174‑M2/29‑1 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc > 1:1713942‑M2/21‑50 (MQ=255) catggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt > 1:1224240‑M2/20‑50 (MQ=255) catggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt > 1:4287489‑M2/20‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCtt < 1:4357331‑M2/32‑1 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCtt > 1:4304443‑M2/19‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCtt > 1:575336‑M2/19‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt < 1:1499891‑M2/31‑1 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt < 1:1169199‑M2/31‑1 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt < 1:6388620‑M2/31‑1 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt < 1:4448095‑M2/31‑1 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTg < 1:7848990‑M2/34‑1 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:1184231‑M2/16‑50 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:7210090‑M2/16‑50 (MQ=255) aacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGccc < 1:2823944‑M2/37‑1 (MQ=255) acggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCt < 1:900525‑M2/38‑1 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt < 1:8179994‑M2/39‑1 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt < 1:5135783‑M2/39‑1 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:4475750‑M2/11‑49 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:4510775‑M2/11‑49 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTc < 1:1413698‑M2/40‑1 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTc < 1:793795‑M2/40‑1 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTc < 1:7810612‑M2/40‑1 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:1328928‑M2/9‑50 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac < 1:5105734‑M2/42‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacc < 1:3514254‑M2/43‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacc < 1:1660028‑M2/43‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacc < 1:5181652‑M2/43‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:6985125‑M2/8‑49 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:3161141‑M2/8‑49 (MQ=255) atcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca > 1:6756312‑M2/7‑50 (MQ=255) tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca > 1:5207356‑M2/6‑49 (MQ=255) cttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca > 1:8127410‑M2/5‑50 (MQ=255) cttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca > 1:1472803‑M2/5‑50 (MQ=255) ttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:2761376‑M2/4‑50 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca < 1:5485378‑M2/46‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt < 1:866252‑M2/47‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATc < 1:2892741‑M2/48‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 1:4572689‑M2/2‑50 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 1:5844914‑M2/2‑50 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 1:6366072‑M2/2‑50 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAc > 1:2951575/1‑50 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAc > 1:655510/1‑50 (MQ=255) | CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586060‑586158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |