BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	675,552	Δ7,819 bp		ybeQ–[hscC]	ybeQ, ybeR, djlB, ybeT, ybeU, djlC, [hscC]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	675552	683370	7819	151 [0]	[0] 154	ybeQ–[hscC]	ybeQ,ybeR,djlB,ybeT,ybeU,djlC,[hscC]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 675551	0 (0.000)	151 (1.390)	75/98	0.0	100%	intergenic (+51/+19)	ybeL/ybeQ	DUF1451 domain‑containing protein YbeL/Sel1 repeat‑containing protein YbeQ
*	?	NC_000913	683371 =	0 (0.000)	151 (1.390)	75/98	0.0	100%	coding (23/1671 nt)	hscC	chaperone protein HscC

Only 100 of 151 total aligned reads displayed.

GTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTCC  >  NC_000913/675503‑675600

gTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCa                                                  >  1:3853869‑M1/1‑49 (MQ=255)

gTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCa                                                  <  1:7856784‑M1/50‑2 (MQ=255)

gTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCa                                                  >  1:6311950‑M1/1‑49 (MQ=255)

 tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCat                                                 <  1:3602755‑M1/50‑3 (MQ=255)

 tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCat                                                 <  1:406646‑M1/50‑3 (MQ=255)

 tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCat                                                 >  1:3386167‑M1/1‑48 (MQ=255)

 tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCat                                                 <  1:534573‑M1/50‑3 (MQ=255)

 tCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCat                                                 <  1:2144827‑M1/50‑3 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcg                                             <  1:1652314‑M1/50‑7 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcg                                             <  1:5062326‑M1/50‑7 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggc                                              >  1:7827775‑M1/1‑44 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggc                                              <  1:7476429‑M1/49‑6 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggc                                              >  1:2782279‑M1/1‑44 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatgg                                               <  1:2375457‑M1/48‑5 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatgg                                               <  1:4074731‑M1/48‑5 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatgg                                               <  1:1915502‑M1/48‑5 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatg                                                <  1:6317793‑M1/47‑4 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatg                                                <  1:86965‑M1/47‑4 (MQ=255)

     aTTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatg                                                <  1:6639146‑M1/47‑4 (MQ=255)

      tttCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggc                                              >  1:4166523‑M1/1‑43 (MQ=255)

        tCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgag                                           <  1:7089715‑M1/49‑9 (MQ=255)

         cGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagt                                          <  1:3074022‑M1/49‑10 (MQ=255)

         cGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagt                                          <  1:4806531‑M1/49‑10 (MQ=255)

         cGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagt                                          <  1:7252885‑M1/49‑10 (MQ=255)

         cGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagt                                          <  1:3776137‑M1/49‑10 (MQ=255)

         cGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagt                                          <  1:3556013‑M1/49‑10 (MQ=255)

          gCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttc                                        <  1:573347‑M1/50‑12 (MQ=255)

          gCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagtt                                         <  1:6602828‑M1/49‑11 (MQ=255)

          acacagCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttc                                        <  1:8257316‑M1/49‑12 (MQ=255)

           cacaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttct                                       <  1:7348597‑M1/50‑13 (MQ=255)

           cacaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttct                                       >  1:1530770‑M1/1‑38 (MQ=255)

            acaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctg                                      >  1:501460‑M1/1‑37 (MQ=255)

            acaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctg                                      <  1:432716‑M1/50‑14 (MQ=255)

            acaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctg                                      <  1:6536629‑M1/50‑14 (MQ=255)

            acaGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctg                                      >  1:2584307‑M1/1‑37 (MQ=255)

             caGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctg                                      >  1:1801511‑M1/1‑36 (MQ=255)

             caGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctg                                      >  1:2285471‑M1/1‑36 (MQ=255)

              aGCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgca                                    >  1:5972614‑M1/1‑35 (MQ=255)

               gCAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcat                                   <  1:8143110‑M1/50‑17 (MQ=255)

                cAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcat                                   >  1:689435‑M1/1‑33 (MQ=255)

                cAATAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcat                                   >  1:4274221‑M1/1‑33 (MQ=255)

                 aaTAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcatta                                 >  1:8254715‑M1/1‑32 (MQ=255)

                 aaTAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcatta                                 >  1:1439152‑M1/1‑32 (MQ=255)

                  aTAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattat                                >  1:1146060‑M1/1‑31 (MQ=255)

                  aTAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattat                                <  1:3440020‑M1/50‑20 (MQ=255)

                  aTAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattat                                <  1:5709127‑M1/50‑20 (MQ=255)

                  aTAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattat                                <  1:6536104‑M1/50‑20 (MQ=255)

                  aTAAAGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattat                                <  1:5040364‑M1/50‑20 (MQ=255)

                    aaaGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattatc                               >  1:7220409‑M1/1‑29 (MQ=255)

                    aaaGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattatc                               >  1:3012347‑M1/1‑29 (MQ=255)

                     aaGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattatcca                             <  1:4584103‑M1/50‑23 (MQ=255)

                     aaGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattatcca                             <  1:2812519‑M1/50‑23 (MQ=255)

                     aaGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattatcca                             >  1:6805291‑M1/1‑28 (MQ=255)

                     aaGAGAATATGGGCCGAATGAAATTCCCatggcgagttctgcattatcc                              <  1:4590546‑M1/49‑22 (MQ=255)

                     aaGAGAATATGGGCCGAATGAAACTCCCatggcgagttctgcattatcc                              <  1:6787872‑M1/49‑22 (MQ=255)

                       gagaATATGGGCCGAATGAAATTCCCatggcgagttctgcattatccatt                           <  1:2513510‑M1/50‑25 (MQ=255)

                       gagaATATGGGCCGAATGAAATTCCCatggcgagttctgcattatccatt                           >  1:7407887‑M1/1‑26 (MQ=255)

                       gagaATATGGGCCGAATGAAATTCCCatggcgagttctgcattatccatt                           <  1:7156457‑M1/50‑25 (MQ=255)

                        agaATATGGGCCGAATGAAATTCCCatggcgagttctgcattatccattg                          <  1:7884841‑M1/50‑26 (MQ=255)

                        agaATATGGGCCGAATGAAATTCCCatggcgagttctgcattatccattg                          <  1:796407‑M1/50‑26 (MQ=255)

                        agaATATGGGCCGAATGAAATTCCCatggcgagttctgcattatccattg                          >  1:7686006‑M1/1‑25 (MQ=255)

                         gaATATGGGCCGAATGAAATTCCCatggcgagttctgcattatccattgc                         <  1:5458950‑M1/50‑27 (MQ=255)

                          aaTATGGGCCGAATGAAATTCCCatggcgagttctgcattatccattgca                        >  1:3542584‑M1/1‑23 (MQ=255)

                            tatGGGCCGAATGAAATTCCCatggcgagttctgcattatccattgcatt                      <  1:3679954‑M1/50‑30 (MQ=255)

                            tatGGGCCGAATGAAATTCCCatggcgagttctgcattatccattgcatt                      >  1:5333645‑M1/1‑21 (MQ=255)

                            tatGGGCCGAATGAAATTCCCatggcgagttctgcattatccattgcatt                      <  1:1081592‑M1/50‑30 (MQ=255)

                             atGGGCCGAATGAAATTCCCatggcgagttctgcattatccattgcatt                      >  1:6011662‑M1/1‑20 (MQ=255)

                              tGGGCCGAATGAAATTCCCatggcgagttctgcattatccattgcattta                    <  1:6171930‑M1/50‑32 (MQ=255)

                              tGGGCCGAATGAAATTCCCatggcgagttctgcattatccattgcattta                    <  1:1818534‑M1/50‑32 (MQ=255)

                              tGGGCCGAATGAAATTCCCatggcgagttctgcattatccattgcattt                     <  1:6078122‑M1/49‑31 (MQ=255)

                              tGGGCCGAATGAAATTCCCatggcgagttctgcattatccattgcattt                     <  1:3415034‑M1/49‑31 (MQ=255)

                               gggCCGAATGAAATTCCCatggcgagttctgcattatccattgcattta                    >  1:2031484‑M1/1‑18 (MQ=255)

                               gggCCGAATGAAATTCCCatggcgagttctgcattatccattgcattta                    >  1:1787364‑M1/1‑18 (MQ=255)

                                ggCCGAATGAAATTCCCatggcgagttctgcattatccattgcatttata                  <  1:4399382‑M1/50‑34 (MQ=255)

                                ggCCGAATGAAATTCCCatggcgagttctgcattatccattgcatttat                   <  1:4375847‑M1/49‑33 (MQ=255)

                                 gCCGAATGAAATTCCCatggcgagttctgcattatccattgcatttatat                 >  1:1073424‑M1/1‑16 (MQ=255)

                                  ccGAATGAAATTCCCatggcgagttctgcattatccattgcatttatatc                <  1:4455425‑M1/50‑36 (MQ=255)

                                  ccGAATGAAATTCCCatggcgagttctgcattatccattgcatttatatc                <  1:6095196‑M1/50‑36 (MQ=255)

                                   cGAATGAAATTCCCatggcgagttctgcattatccattgcatttatatct               >  1:8042840‑M1/1‑14 (MQ=255)

                                    gAATGAAATTCCCatggcgagttctgcattatccattgcatttatatctt              <  1:369197‑M1/50‑38 (MQ=255)

                                    gAATGAAATTCCCatggcgagttctgcattatccattgcatttatatctt              >  1:5372274‑M1/1‑13 (MQ=255)

                                     aaTGAAATTCCCatggcgagttctgcattatccattgcatttatatctt              >  1:1771365‑M1/1‑12 (MQ=255)

                                      aTGAAATTCCCatggcgagttctgcattatccattgcatttatatcttga            <  1:3526048‑M1/50‑40 (MQ=255)

                                      aTGAAATTCCCatggcgagttctgcattatccattgcatttatatcttga            <  1:1929670‑M1/50‑40 (MQ=255)

                                      aTGAAATTCCCatggcgagttctgcattatccattgcatttatatcttga            <  1:3363901‑M1/50‑40 (MQ=255)

                                       tGAAATTCCCatggcgagttctgcattatccattgcatttatatcttgaa           <  1:3446768‑M1/50‑41 (MQ=255)

                                         aaaTTCCCatggcgagttctgcattatccattgcatttatatcttgaaag         <  1:7751510‑M1/50‑43 (MQ=255)

                                         aaaTTCCCatggcgagttctgcattatccattgcatttatatcttgaaa          <  1:5541542‑M1/49‑42 (MQ=255)

                                         aaaTTCCCatggcgagttctgcattatccattgcatttatatcttga            >  1:3500182‑M1/1‑8 (MQ=255)

                                          aaTTCCCatggcgagttctgcattatccattgcatttatatcttgaaaga        <  1:4856195‑M1/50‑44 (MQ=255)

                                          aaTTCCCatggcgagttctgcattatccattgcatttatatcttgaaag         >  1:6165342‑M1/1‑7 (MQ=255)

                                           aTTCCCatggcgagttctgcattatccattgcatttatatcttgaaaga        >  1:7993845‑M1/1‑6 (MQ=255)

                                            ttCCCatggcgagttctgcattatccattgcatttatatcttgaaagaaa      <  1:7091671‑M1/50‑46 (MQ=255)

                                              cccatggcgagttctgcattatccattgcatttatatcttgaaagaaaa     <  1:5813807‑M1/49‑47 (MQ=255)

                                               ccatggcgagttctgcattatccattgcatttatatcttgaaagaaaaa    <  1:7187569‑M1/49‑48 (MQ=255)

                                               ccatggcgagttctgcattatccattgcatttatatcttgaaagaaa      >  1:1707547‑M1/1‑2 (MQ=255)

                                                catggcgagttctgcattatccattgcatttatatcttgaaagaaaaaga  <  1:757822‑M1/50‑50 (MQ=255)

                                                catggcgagttctgcattatccattgcatttatatcttgaaagaaaaaga  <  1:1076287‑M1/50‑50 (MQ=255)

                                                catggcgagttctgcattatccattgcatttatatcttgaaagaaaaa    >  1:8099063‑M1/1‑1 (MQ=255)

                                                catggcgagttctgcattatccattgcatttatatcttgaaagaaaaa    >  1:6882625‑M1/1‑1 (MQ=255)

GTCTGATTTCGCACAGCAATAAAGAGAATATGGGCCGAATGAAATTCCCCGGCCCTTGTTTTTATCTCTACAGTAAATCTTCAGTCTCACGAATTTCC  >  NC_000913/675503‑675600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`