| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 116 [0] | [0] 113 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 112 (1.030) | 67/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 116 total aligned reads displayed.
ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997818‑997916 | aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg < 1:2044587/50‑1 (MQ=255)aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg < 1:1190172/50‑1 (MQ=255)aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg > 1:1944845/1‑50 (MQ=255)aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg < 1:5790999/50‑1 (MQ=255) tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt < 1:5494706‑M1/50‑2 (MQ=255) tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt > 1:7706776‑M1/1‑49 (MQ=255) tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt < 1:4107160‑M1/50‑2 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt > 1:5450808‑M1/1‑47 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 1:2277488‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 1:7576736‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt > 1:6538633‑M1/1‑47 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:1246248‑M1/1‑46 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:4758156‑M1/1‑46 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:4217085‑M1/1‑46 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:2914836‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:8188502‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg < 1:1773192‑M1/49‑5 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg < 1:2132899‑M1/49‑5 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc > 1:4746477‑M1/1‑44 (MQ=255) ttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:1346859‑M1/1‑43 (MQ=255) ttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:5447109‑M1/1‑43 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:7029862‑M1/1‑42 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:4839074‑M1/1‑42 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcag > 1:1745761‑M1/1‑40 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcag < 1:4594251‑M1/50‑11 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgca < 1:4887914‑M1/49‑10 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgca < 1:1291183‑M1/49‑10 (MQ=255) aGGCATTATCATATTTACGAAGAGATCAAGATGATAACGtttgccgcagg < 1:4615685‑M1/50‑12 (MQ=255) ggCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt > 1:2073996‑M1/1‑38 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtc < 1:2090921‑M1/50‑14 (MQ=255) gCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtc < 1:8263768‑M1/50‑14 (MQ=255) cATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtc > 1:2180173‑M1/1‑36 (MQ=255) cATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtc > 1:5063405‑M1/1‑36 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:6932121‑M1/1‑35 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:1456470‑M1/1‑35 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa < 1:1362660‑M1/50‑16 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa < 1:8322132‑M1/50‑16 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat < 1:4191496‑M1/50‑17 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat > 1:725353‑M1/1‑34 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:6331651‑M1/1‑33 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:3993881‑M1/1‑33 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:7519356‑M1/1‑33 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:149642‑M1/1‑33 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc > 1:6095285‑M1/1‑32 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc > 1:6837249‑M1/1‑32 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc > 1:117963‑M1/1‑32 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc > 1:3679108‑M1/1‑32 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt < 1:6774214‑M1/49‑18 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc > 1:4362049‑M1/1‑30 (MQ=255) cATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc > 1:3566512‑M1/1‑30 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct > 1:279633‑M1/1‑29 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc < 1:1961362‑M1/49‑21 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:6116913‑M1/1‑28 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:696860‑M1/1‑28 (MQ=255) atTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt > 1:6340006‑M1/1‑27 (MQ=255) atTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt > 1:2409635‑M1/1‑27 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt > 1:1380135‑M1/1‑26 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt < 1:7173790‑M1/50‑25 (MQ=255) ttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg > 1:3111146‑M1/1‑25 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg > 1:1556619‑M1/1‑24 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg > 1:5784111‑M1/1‑24 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg < 1:1527625‑M1/49‑27 (MQ=255) aCGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg < 1:4203335‑M1/49‑27 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:3526236‑M1/50‑29 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:3983106‑M1/50‑29 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc > 1:4198286‑M1/1‑22 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt < 1:4155613‑M1/49‑28 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:6100033‑M1/1‑21 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:1259492‑M1/1‑21 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:1009492‑M1/1‑20 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:2786784‑M1/1‑20 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccg > 1:1837563‑M1/1‑19 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccg > 1:4578151‑M1/1‑19 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaa < 1:5930766‑M1/50‑33 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaa > 1:1674241‑M1/1‑18 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac < 1:1197286‑M1/50‑34 (MQ=255) agaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaac > 1:5088320‑M1/1‑17 (MQ=255) gaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaact > 1:6310250‑M1/1‑16 (MQ=255) tCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:8114474‑M1/1‑14 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:7820423‑M1/1‑13 (MQ=255) cAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg > 1:763226‑M1/1‑13 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca < 1:7207550‑M1/50‑39 (MQ=255) aGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca < 1:2791491‑M1/50‑39 (MQ=255) ggATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgca > 1:2701544‑M1/1‑11 (MQ=255) ggATGATAACGtttgccgcaggtcaattcccgtttggtccgaactcgcac < 1:6830‑M1/50‑40 (MQ=255) gatgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:2132224‑M1/1‑10 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat < 1:4966407‑M1/50‑42 (MQ=255) tgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat > 1:2861301‑M1/1‑8 (MQ=255) tgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat > 1:4969261‑M1/1‑8 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataat < 1:5524052‑M1/50‑45 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa < 1:5675342‑M1/49‑44 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa > 1:5392185‑M1/1‑6 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa < 1:4806397‑M1/49‑44 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa > 1:3434721‑M1/1‑6 (MQ=255) aaCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatac > 1:7764457‑M1/1‑4 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg > 1:7816484‑M1/1‑3 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 1:3200901‑M1/50‑48 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatac < 1:4654271‑M1/49‑47 (MQ=255) cGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgc < 1:3453471‑M1/50‑49 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:7677180‑M1/1‑1 (MQ=255) | ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997818‑997916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |